UFO09081.5prime Sequence
1109 bp (1001 high quality bases) assembled on 2011-08-10
> UFO09081.5prime
CAGTCGACATGGCGACAGCTGAAATCGACGATTTGATTGAAAAGCTGAAG
ACGACCAGTGTCAGTCCGGCGAACACGACCAACTTGCTCTGCGAGATCTC
GGCGACGAAGGACCCCAAACTTTTCGATAAGCACGAGCTGGCAGAGTGCT
TTCTGGGCCTCACCAAGTGCGACGACACAAACGTGCGCAAGGAGGCGGCC
AAGTGCATTGCGGAGATCACCAAGTCCGAGGTGCAGCGCAAGAAGTTCAC
CAAGAGGAATATAATAGCCGCATTTCTGGAGTGCTTGCGACAAGTGCCCA
CGTCCGACGGCAGTATGGAGCTGCCCATACAGATTTGTCGGGCACTGGGC
AATATCTGCTACCTAAACGACGAAGCCAGGGACTTAATACTCGAGCTGGA
GGGCGATGCTGTTCTACTGCGACTGCTGGACATCACAACCATCGAGGACG
TGGCCAATGCGGCGCAATTCATCAAAGTGCGCGGCGGCTTGCTGTCCAAC
TATTTGCTCGGAGGCGAGGGCTTGGCCAAGCGGGCCATGGAGTTGGGCGT
GATGAAGAAGCTGCAAGGCATCATCGACATTGGCGCCTCCAATGTGGAAC
AGCATGAGGATCTGCTGCTGAACACGCTTCCACTGCTCAGTATACTCACC
GAGAACGTGTCGGATCTGAACTTCGACTCTTCCCTGAATATCCAGCTGTC
TCGCATTCTGGCCGCTTCCACGAATCCCGATCTTGCCGAGATGTGCCTGG
AGCTGCTCCATTACCAGGCGGAGAGCGACGAAGTCAAGCTTATTTTGGCC
AAGGACGGTCTGTGCGAAACCATCTACAACCTGCTGGAAAAGTACAAGAC
TCTGGCCAGCACAAGTGAGGCCAGGCGTTGATGAAACTCGCCTGCGACTC
ATCGTATTATCCTTACTGTGATGACTCAATGCACTATTTGTACACCACGC
CCGCTGCTGAAGACATGTCGATTGCTGGACTCGACGACATCGATCTGCTA
ACACGGCGTGCTGGCCCTGGGCACTTTGGCGGCACCGATTGCCACTGCAT
CTACTTGTGGAGCGCGAACTATGAACAGCTGCTCGAGTGCTGCCAGACAC
GTCAGGACG
UFO09081.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vimar-RC | 3470 | CG3572-RC | 293..1392 | 7..1092 | 5000 | 98 | Plus |
| vimar-RB | 3467 | CG3572-RB | 293..1389 | 7..1092 | 4945 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6977705..6978600 | 909..16 | 4380 | 99.8 | Minus |
| 2R | 25286936 | 2R | 6977461..6977603 | 1056..920 | 280 | 91 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:47:54 has no hits.
UFO09081.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:29 Download gff for
UFO09081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RC | 284..1372 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:48:48 Download gff for
UFO09081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RC | 287..1375 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:28 Download gff for
UFO09081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RC | 287..1375 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:28 Download gff for
UFO09081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6977692..6978600 | 16..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:48:48 Download gff for
UFO09081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2865197..2866105 | 16..920 | 99 | | Minus |
