UFO09082.5prime Sequence
1126 bp (981 high quality bases) assembled on 2011-08-10
> UFO09082.5prime
CAGTCGACATGCCAGAAGCTTGTTGCTTTCTCCACTCCTCTTTCATCCTC
GTCATGTGTTTCTATCTGCAGATCAAGCGCAACATTCTACTGGGCAAGCT
GCCCTGCTCCAGCAACACCCAGTGCCTGCTTGCCAGCTACACTGTGCAAT
CCGAGTTGGGTGACTTTAACGCATTAGAACACCAGCCGGGCTATCTGAGC
GGAATGCAGCTGCTCTGCGACCAGACAACGGAGCCGGAGCGGAAGGTTGG
AGAACTGCACAAGTTGCACCGTGGGCAGCTACCGGCGGACGCGGAGTACA
ACTACCTGGAGCACGCTAAGCGATTGGAGCTATACGGGATTGACCTGCAC
AGGGCCACCGACTCCAACGGCAAGGAGCTGCAGCTGGGCGTATCGGCCGT
CGGACTGCTCGTCTTCCAGCATTCATTGCGCGTGAACACTTTCTCGTGGA
GCAAGATGGTCAAGGTGTCGTTCAAGCGTAAGGACTTCTTCATCCAGTTG
CGCCGCGAGCCCAGCGAGAACTACGATACTTTGCTGGGCTTTGGGATGAG
CAGCCACAAGCACGCCAAGGCGCTGTGGAAGTCCTGCGTGGAGCACCACA
GCTTCTTCCGCCTAAAGCGACCACACCGCCTCTCACGCTTCCTCAATATC
AGTTTGGGTAGCAAGTTTTACTACTCTGGACGCACAGAGCTACAGGCTGT
GCAGGAGTCCAAACAGCGTGGTCGCATTCACAAGGTATTTGTGCGCTCGC
CGAGCAAGCGGCTTCTGGGAGCCGCCGGCGGTGTGGGAACGTCAGGCTCC
TCGGGCGGTACGCCTATGCAGCAGCACAGCGGCTCCGAGAGCGCCAATTC
CCACAACAACGGAAAGCCAGCCGGCGCAGGAACCATACTGACCATTAACA
AAGACAAGCCGCCCGCACGAATAACAAGGTCACCTCTAAGGAAGCCGATT
CATGCCGCGCAAGGCGTGGGAGCAGCAAGCGACTATTATGACTTCAGCTC
GACGTCGGTTTTATTGAAACATGCACCCGACGCTTCGAGTCTGCATCCCC
GTCTACCATGCCGCCCGCCTACTTCCGGCCAGACACAGTCAAATTCTAAC
TGCCACACATCGGCGGAATGCCGTGG
UFO09082.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptpmeg-RK | 4079 | CG1228-RK | 1037..2083 | 60..1105 | 4860 | 98.1 | Plus |
| Ptpmeg-RJ | 4028 | CG1228-RJ | 986..2032 | 60..1105 | 4860 | 98.1 | Plus |
| Ptpmeg-RI | 3596 | CG1228-RI | 865..1911 | 60..1105 | 4860 | 98.1 | Plus |
| Ptpmeg-RK | 4079 | CG1228-RK | 206..256 | 9..59 | 255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 352838..353663 | 151..977 | 3945 | 99.3 | Plus |
| 3L | 28110227 | 3L | 352681..352771 | 60..150 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 353761..353833 | 1000..1072 | 290 | 93.2 | Plus |
| 3L | 28110227 | 3L | 328302..328352 | 9..59 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:47:59 has no hits.
UFO09082.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:30 Download gff for
UFO09082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpmeg-RB | 60..1156 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:49:15 Download gff for
UFO09082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpmeg-RI | 862..1905 | 53..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:30 Download gff for
UFO09082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpmeg-RI | 862..1905 | 53..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:30 Download gff for
UFO09082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 328297..328352 | 1..59 | 93 | -> | Plus |
| 3L | 352681..352771 | 60..150 | 100 | -> | Plus |
| 3L | 352838..353687 | 151..999 | 98 | -> | Plus |
| 3L | 353761..353860 | 1000..1098 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:49:15 Download gff for
UFO09082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 328297..328352 | 1..59 | 93 | -> | Plus |
| arm_3L | 352681..352771 | 60..150 | 100 | -> | Plus |
| arm_3L | 352838..353687 | 151..999 | 98 | -> | Plus |
| arm_3L | 353761..353860 | 1000..1098 | 91 | | Plus |
