UFO09086.5prime Sequence
1132 bp (1025 high quality bases) assembled on 2011-08-10
> UFO09086.5prime
CAGTCGACATGGCGCACCAGCAGCAACAACAACTGGCTCCATCGGTCAAC
TGTTCACTGGACGATATCGATCTGACGGCCCTAAAAGATCCAGCTGGCAT
CTTTGAGCTCATCGAAGTTGTGGGCAATGGCACCTACGGTCAGGTCTACA
AGGGCCGTCACACGAAGACTGGTCAATTGGCTGCCATAAAGGTGATGGAC
GTCACCGAGGACGAAGAGGAGGAGATCAAGCTGGAGATCAATGTGCTAAA
GAAATACTCGAATCACCGCAACATCGCCACCTACTACGGAGCCTTCATCA
AGAAGTCGCCACCTGGGAAGGACGATCAGCTCTGGCTGGTGATGGAGTAC
TGTGGTGCTGGATCGGTAACGGATCTGGTCAAGTCCACCAAGGGTCAGAG
CCTGAAGGAGGAGTGGATCGCCTACATCTGCCGCGAGATTCTGCGGGGCC
TGAGCTACCTGCACTCGAACAAAGTCATCCATCGCGACATCAAGGGGCAG
AATGTGCTCCTCACCGACAACGCCGAGGTGAAGCTGGTGGACTTTGGTGT
CTCCGCCCAGCTGGATCGCACGATAGGACGGCGCAACACATTCATCGGTA
CTCCCTACTGGATGGCCCCCGAGGTCATTGCCTGCGACGAGAATCCCGAC
GCCACGTACGACAATCGCTCCGATCTGTGGTCGCTGGGCATCACCGCTCT
GGAGATGGCTGAGTCACAGCCCCCGCTCTGCGATCTGCATCCGATGCGCG
CCCTCTTCCTGATTCCGCGCAACTCGCCACCCAGGCTCAAATCGAAGAAG
TGGTCCAAGAAGTTTCACGGCTTTATTGACACGGTGCTAGTTAAGGACTA
TCACCAGCGGCCTTACACCGAGAACCTGCTGAAGCACGGCTTCATCAAGG
ACCAGCCCACAGATCGCCAGGTGCGCATCCAGCTGAGGACCACATCGATC
GCTGCAGAGCGCAAGCAGGAGAAGGAGCGCGAGACTATCGCTACTCGGCT
CCGACACGACGACGACGACCACAGCTGCCGGTGAGCACAGCCTCCATTGT
CCAGCACAGGCGGCGAATACGTTGGCGCCGCACTTCAGCGATCAGAAGTT
CGCTACGCGGACGCAGCAGACGCATTACCTGA
UFO09086.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msn-RI | 5643 | CG16973-RI | 332..1412 | 9..1082 | 5095 | 98.8 | Plus |
| msn-RH | 4618 | CG16973-RH | 195..1275 | 9..1082 | 5095 | 98.8 | Plus |
| msn-RG | 4282 | CG16973-RG | 195..1275 | 9..1082 | 5095 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2567367..2567816 | 600..151 | 2250 | 100 | Minus |
| 3L | 28110227 | 3L | 2567046..2567293 | 840..593 | 1225 | 99.6 | Minus |
| 3L | 28110227 | 3L | 2566713..2566935 | 1054..839 | 690 | 95.5 | Minus |
| 3L | 28110227 | 3L | 2585604..2585682 | 87..9 | 395 | 100 | Minus |
| 3L | 28110227 | 3L | 2579454..2579520 | 153..87 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:48:13 has no hits.
UFO09086.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:32 Download gff for
UFO09086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msn-RB | 186..1289 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:50:51 Download gff for
UFO09086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msn-RG | 186..1289 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:36 Download gff for
UFO09086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msn-RG | 186..1289 | 1..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:36 Download gff for
UFO09086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2567046..2567288 | 598..840 | 100 | <- | Minus |
| 3L | 2566671..2566933 | 841..1093 | 93 | <- | Minus |
| 3L | 2567370..2567814 | 153..597 | 100 | <- | Minus |
| 3L | 2579455..2579520 | 87..152 | 100 | <- | Minus |
| 3L | 2585605..2585688 | 1..86 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:50:51 Download gff for
UFO09086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2566671..2566933 | 841..1093 | 93 | <- | Minus |
| arm_3L | 2567046..2567288 | 598..840 | 100 | <- | Minus |
| arm_3L | 2567370..2567814 | 153..597 | 100 | <- | Minus |
| arm_3L | 2579455..2579520 | 87..152 | 100 | <- | Minus |
| arm_3L | 2585605..2585688 | 1..86 | 95 | | Minus |
