UFO09087.5prime Sequence
1031 bp (268 high quality bases) assembled on 2011-08-10
> UFO09087.5prime
CAATCCACATGGGCGAGTTCTTTAAGTCGCTCAACCTCAACTACTTCTCC
TCTAGCGAGGTCAACGGAGCTGCAGGAAACGGAGCACCAGAGGCCCTCGG
TGGCAGGCTGGACAATGACTTCGTGGGCCAGGTCGTTGAAGTCGCTGGAC
ACAGGCTGCGCATCAAGTGTGTCATCGCCGAAGGCGGATACTCCTTCGTG
TATGTAGCCCAAGATGTGCAAACTGGCACAGAATACGCCCTCAAGCGTCT
GATCGGGGCTGACATGCAAGCCTCCACCGCCATCATCAACGAGATCAACA
TCCACAAGCAGCTGTCGGGGCACGAGAACATTGTCGCCTTTGTGGGTTCC
AGTTATACCGCCCCATCAACTCAATTGGGAGCCCAGTACTTGCTCCTCAC
CGAGCTGTGTAAAGGCGGATCTCTGGTGGACTGCTTCAGAACAAACAATG
CTCCATTCAATCCGACTTGTGTTCTGCGCATCTTCTACCAAATGGCGCGG
GCTGTGGCCAGCTTGCACTCACAGTCACCGCCGATAGCCCACCGAGATAT
AAAGATTGAGAACTTTCTCATTGGCAACGACAAACAGATCAAGCTGTGCG
ACTTTGGGTCCGCCAGCACGGAGGTCCTGTCGCCCACGTTTGAGTGGAGC
GCCAACCAGCGCAGCATGCTGGAGGACCAGCTAAACACTGTTACTACTCC
GATGTACCGATCCCCTGAGATGCTCGACACTTGGTCCAACAACCCGATTG
AGCCCAAAGTGGACATATGGGCTCTCGGATGCATTCTCTACTTCCTGTGC
TACCGAAGCATCCCTACGACGATGGAGGAGAGCTGCGGATCATTAGCGCC
TATTACATGCTTCCTCCAGATCCTCAGTACAATGCTTCAGCGATATAATC
CGTGCTGTTTAATAGTGAACCCGTTCGATCTCCTGATATTATCATGGTGC
TGGAGGTCCTTGCAATCTCGCTGAAATAACCATATTGGTCGCTCAGACGA
CCTCTAGACTTCGTATGATGCTCATCGAGTC
UFO09087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aux-RC | 4276 | CG1107-RC | 158..1185 | 9..1031 | 4580 | 96.8 | Plus |
| aux-RB | 4312 | CG1107-RB | 158..1185 | 9..1031 | 4580 | 96.8 | Plus |
| aux-RA | 4410 | CG1107-RA | 256..1283 | 9..1031 | 4580 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4222256..4222739 | 553..1031 | 1700 | 93.4 | Plus |
| 3R | 32079331 | 3R | 4221754..4221987 | 182..415 | 1155 | 99.6 | Plus |
| 3R | 32079331 | 3R | 4221143..4221318 | 9..184 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 4222056..4222201 | 413..558 | 715 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:48:17 has no hits.
UFO09087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:32 Download gff for
UFO09087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aux-RB | 139..1174 | 1..1031 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:51:22 Download gff for
UFO09087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aux-RA | 248..1283 | 1..1031 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:38 Download gff for
UFO09087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aux-RA | 248..1283 | 1..1031 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:38 Download gff for
UFO09087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4222058..4222197 | 415..554 | 100 | -> | Plus |
| 3R | 4221756..4221986 | 184..414 | 99 | -> | Plus |
| 3R | 4221135..4221317 | 1..183 | 97 | -> | Plus |
| 3R | 4222258..4222739 | 555..1031 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:51:22 Download gff for
UFO09087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 46857..47039 | 1..183 | 97 | -> | Plus |
| arm_3R | 47478..47708 | 184..414 | 99 | -> | Plus |
| arm_3R | 47780..47919 | 415..554 | 100 | -> | Plus |
| arm_3R | 47980..48461 | 555..1031 | 93 | | Plus |
