UFO09088.5prime Sequence
1159 bp (1044 high quality bases) assembled on 2011-08-10
> UFO09088.5prime
CAGTCGACATGAATCACCTATCGCCGCCGCCATCGCCGCACTCCCAGCAG
CCGAGTCCCGCGGGATTGGGCTGCCATGGAGCAGCTCTGGACAAGCAGTG
GATGCAGCGGGCATCCGCCTTCAACACTGTGATAGCCTCCGCCGCAGCAC
AGAAACTCAATGGTCGAGATCTGCCCTTTTTGTACAACCCGCTGCTCTAC
TCGAGTGCCCTACTGTGGCCCCAATTTTTGTTGTCCTCGGCCACGGCTCT
GGGTACACCACTGACCCCCATGACCCCCAAATCGCCCGCCTCTGTGGTTT
TGGGTCAGCGGGATCGTGACTTTGCCTTGACGCCCGAAAAGGAGCATGAA
CTCCAAATGAACAATAACAATGAGAACAGCAAGCAGGACTATCAGGAGCA
GGATGAGGATATGCCACTAAATCTAAGCACCAAGGAGCGCATCACATCGG
ATGATTCCAACCGAGATCAGTATCACAGCAGCAGCAACAACAGCAGCAGG
AGCAGTTCCAGCAGTGAAGTGGAGCAACTGCATCCGATGACCTCGCTGAA
CGTTACCCCGCCTCCCCTGAGCGCTGTGAATCTAAAGAGTTCGAGTACAC
CACAGCAACAGCGCCAGAGATCGCAGGGTAACATCATCTGGTCACCGGCC
TCGATGTGCGAGAGATCGGCGAGAAGGGAGCAGTACGGCCTGAAGATGGA
GGAGCAGGGCGATGAGGAGGAGCACCAGGTGGATCCTATTGTGCGAAAGT
TCAAGTATGAGCGCAGAACTGCATCCATATCCTCGCTGCAATCGCCGATC
TCCTCGCTGTCCGCTCCCGCCTCGAATGCCGTCCAGGATCTGGAGTTCGA
GGTGCCCCAACAGCAGTTGTATGCCCATCGCAGCGCATTCATGGGCCGGA
TTGACGGGCAACAATCTGGAGCTGCTCACCCAGCACTTGAAGCTGAGAGC
GAGCAGCCGCAGCAGCAGCAGCAACAGCATCGCATCAAGGACGAGCAGCA
GCAGGATAACCGCTCGGCAGCGCACTCATGATTTTGGTGGCAGCCGCCGA
TTCGGCTACATGCGTAATCAACACCAACAGCGCAGCAGCCAGCCAGCCAA
CACAGTTGCATTCACCAGCAGCGAGCCGCAGCACTCAGCCATTCAGCAGC
CACATTCCT
UFO09088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sens-RA | 2451 | CG32120-RA | 219..1364 | 9..1155 | 5350 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13399552..13400468 | 1081..167 | 4360 | 99.3 | Minus |
| 3L | 28110227 | 3L | 13400748..13400907 | 168..9 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:48:22 has no hits.
UFO09088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:33 Download gff for
UFO09088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sens-RA | 209..1367 | 1..1159 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:51:53 Download gff for
UFO09088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sens-RA | 209..1367 | 1..1159 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:40 Download gff for
UFO09088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sens-RA | 209..1367 | 1..1159 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:40 Download gff for
UFO09088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13399478..13400466 | 169..1159 | 98 | <- | Minus |
| 3L | 13400748..13400913 | 1..168 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:51:53 Download gff for
UFO09088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13392578..13393566 | 169..1159 | 98 | <- | Minus |
| arm_3L | 13393848..13394013 | 1..168 | 97 | | Minus |
