UFO09089.5prime Sequence
1118 bp (1000 high quality bases) assembled on 2011-08-10
> UFO09089.5prime
CAGTCGACATGGCCAACAAGCTGAGGAAATCGAACGCCATCGAATGGGCA
ACGGCCACCGGCACAGTACCGCTCCTGGAAAGGAGCTGCTGCCACAGCGA
GGACGCCGCACTGGAGCCCCAAGCGAGCAAAACCAGCCATAGAGAACAAG
CCCCCATCCTGCGCCACCTGAGCCAACTGAGCCACCTGCTCATCATCGCC
GGACTGCTGATCGTCTGCTTGGCGGGCGTGACGGAGGGCCGCCGGCATGC
GCCGCTCATGTTCGAGGAGTCCGACACGGGCAGGCGGTCCAACCGACCAG
CGGTCACCGAATGCCAGTTTGGCAAAGTTTTGCGCGAATTGGGGTCCACC
TGGTATGCGGATTTGGGTCCACCCTTCGGAGTTATGTACTGCATCAAGTG
TGAATGTGTGGCGATACCCAAGAAGCGGCGCATCGTTGCACGCGTCCAGT
GTCGCAATATCAAAAACGAGTGCCCGCCGGCCAAATGCGATGATCCCATC
TCGTTGCCCGGAAAATGCTGCAAGACCTGTCCCGGCGATCGAAACGATAC
GGATGTAGCCTTGGATGTGCCCGTGCCCAATGAAGAGGAAGAGCGCAACA
TGAAACATTACGCTGCGTTGCTAACGGGCCGCACCTCCTATTTCCTCAAG
GGTGAGGAAATGAAGTCCATGTACACCACCTACAATCCGCAGAATGTGGT
GGCCACCGCCCGTTTCCTGTTCCACAAGAAGAATCTATACTACTCCTTCT
ACACCTCATCGCGAATCGGTCGTCCGCGTGCCATTCAATTCGTTGATGAT
GCGGGTGTTATCCTGGAGGAGCATCAACTGGAGACCACCTTGGCGGGCAC
TCTCAGTGTCTATCAGAATGCCACGGGCAAGATCTGCGGTGTCTGGCGAC
GAGTTCCACGTGATTACAGCGCATTCTGCGCGACGATCGTCTCATGTGTC
CTCCTCTGGGGCAACAAACAGCAGGCCGAGTGGCTCTGGTCGGAAAGGTG
GCCAATTACACGGCCCTGCAGGACGAGTTGTTCAGTCGGCTACTGGAAGC
ACCACTTCCCGGATGCAACGGATCCCAGCTTGCCGGACGGTGGCACAGCG
ATCGTGTCCACAGCACGG
UFO09089.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sog-RB | 4841 | CG9224-RB | 1133..2246 | 7..1111 | 5185 | 98.3 | Plus |
| sog-RE | 5816 | CG9224-RE | 815..1928 | 7..1111 | 5185 | 98.3 | Plus |
| sog-RA | 4523 | CG9224-RA | 815..1928 | 7..1111 | 5185 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15607293..15607806 | 1111..607 | 2010 | 95.9 | Minus |
| X | 23542271 | X | 15625430..15625726 | 303..7 | 1485 | 100 | Minus |
| X | 23542271 | X | 15613218..15613351 | 546..413 | 670 | 100 | Minus |
| X | 23542271 | X | 15614797..15614907 | 413..303 | 555 | 100 | Minus |
| X | 23542271 | X | 15607974..15608034 | 606..546 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:48:27 has no hits.
UFO09089.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:34 Download gff for
UFO09089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sog-RA | 810..1937 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:52:25 Download gff for
UFO09089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sog-RA | 810..1937 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:41 Download gff for
UFO09089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sog-RA | 810..1937 | 1..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:41 Download gff for
UFO09089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15607284..15607806 | 607..1118 | 96 | <- | Minus |
| X | 15607974..15608033 | 547..606 | 100 | <- | Minus |
| X | 15613218..15613350 | 414..546 | 100 | <- | Minus |
| X | 15614797..15614906 | 304..413 | 100 | <- | Minus |
| X | 15625430..15625731 | 1..303 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:52:25 Download gff for
UFO09089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15501317..15501839 | 607..1118 | 96 | <- | Minus |
| arm_X | 15502007..15502066 | 547..606 | 100 | <- | Minus |
| arm_X | 15507251..15507383 | 414..546 | 100 | <- | Minus |
| arm_X | 15508830..15508939 | 304..413 | 100 | <- | Minus |
| arm_X | 15519463..15519764 | 1..303 | 99 | | Minus |
