UFO09091.5prime Sequence
1118 bp (1006 high quality bases) assembled on 2011-08-10
> UFO09091.5prime
CAGTCGACATGATGTACGACAACGAGGAAGAACTGTACGAGGAGGAGAAT
GCCGAGGAGATCTCTCACGAGCTGTGGCAGGAAGCCTGCTGGATCGTGAT
TAACGCGTACTTCGACGAGAAGGGCTTGGTGCGGCAGCAGCTGGACAGTT
TCGATGAGTTCATTCAGATGTCGGTGCAGCGCATTGTGGAGGATTCCCCC
GCCATTGAGTTGCAGGCGGAAGCGCAGCACACATCCGGAGAGGTGGAAAC
CCCGCCCAGATTCTCGCTGAAATTCGAGCAAATCTATCTTTCCAAGCCAA
CACATTGGGAAAAGGATGGTTCGCCCAGTCCTATGATGCCGAACGAGGCC
CGCCTGCGAAATCTAACTTACTCCGCTCCTCTCTACGTGGACATTACGAA
AACCAAGAATGTCGAGGGCCTGGATCCCGTGGAAACGCAGCATCAAAAGA
CTTTCATAGGCAAGATTCCCATCATGTTGAGATCAACGTACTGTTTGCTA
TCACAGCTTACTGATCGTGATCTTACGGAGCTGAACGAGTGCCCGTTGGA
TCCCGGTGGCTACTTCATCATCAACGGCTCCGAGAAGGTGCTAATTGCCC
AAGAGAAAATGGCCACCAACACAGTGTACGTGTTCAGCATGAAAGATGGC
AAGTATGCCTTTAAGACTGAGATTCGGTCGTGTTTGGAGCACAGTTCCAG
ACCCACGTCTACACTGTGGGTAAACATGATGGCAAGAGGATCGCAAAACA
TAAAAAAGTCAGCCATTGGTCAGAGGATTATTGCCATCTTACCGTACATC
AAACAGGAGATACCCATTATGATTGTGTTTCGAGCATTGGGCTTCGTGGC
CGATCGCGATATTCTGGAGCATATCATCTATGACTTCGACGATCCCGAGA
TGATGGAAATGGTGAAACCTTCTCTGGACGAGGCTTTTGTAGTCCAAGAG
CAGATGTTGCCTTGAATTTCATTGGGAGCTAGAGGAGCACGTCCGGGAGT
CACAAAAGACAGCGTATAAAGTACGCTAAAGGAAATTTGCAAAAGAAATG
GCTGCCCCACGTGGAGATATCCGAATTCTCGGCGAGACAGAAGCCTATCT
TTGGCTACATGTTACCGC
UFO09091.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII140-RB | 4060 | CG3180-RB | 156..1235 | 8..1088 | 5135 | 98.8 | Plus |
| RpII140-RA | 3775 | CG3180-RA | 156..1235 | 8..1088 | 5135 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14126094..14127145 | 29..1079 | 4935 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:48:31 has no hits.
UFO09091.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:34 Download gff for
UFO09091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII140-RA | 154..1233 | 8..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:52:55 Download gff for
UFO09091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII140-RA | 154..1233 | 8..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:43 Download gff for
UFO09091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII140-RA | 156..1235 | 8..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:43 Download gff for
UFO09091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14125946..14125968 | 8..30 | 100 | -> | Plus |
| 3R | 14126096..14127152 | 31..1088 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:52:55 Download gff for
UFO09091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9951668..9951690 | 8..30 | 100 | -> | Plus |
| arm_3R | 9951818..9952874 | 31..1088 | 98 | | Plus |
