UFO09092.5prime Sequence
1103 bp (996 high quality bases) assembled on 2011-08-10
> UFO09092.5prime
CAGTCGACATGTTCTCCAGAAAGAAGCCAGAGCCAGCGAAAAGAAGGCAA
CACGATTTATCGCAGTTCGGTCTTACGGAAATCCCAGATGATTTTGATCC
CAGCGCTGGATATGGTGAGGACGATGGGGGTGACAGTGATTTGGAGGCAG
AGCTTGCGGCCATAACCGGCGGAGAAGGAGCCAAGCCAAAGCCCAAGCCC
AAAGCAAAGCTGTTACCCGCCAGTGATTTGGACAAAATGATAGCCGACAG
CTTGCGTGATGTCAGCGACGATGATGATGATGACAATTTGGAAAGCGATC
CGGATCTTCTTGGCGAGCTGAGCGGAATCGGTGGTCTAGAGGAGGCAGAG
GAAGAGGAGCCTGTCGCACAACCGCCAGCTGCCTCTGAGGAACCCGTCCA
GACCTTTCTGCCCACGACGACTGTGGACACATTAAGCATTATCAAACAGC
GCCTGGAAATGTACAAGCAGGCCGAGGCCAATGCCAAGACTGCCGGCGAT
TCTGGCAAAGCAAGGCGATTTGGAAGAGGCCTTAAGACTCTGAAAGATCT
GCACAGGCAGGCAGCGGCTGGCAAGTCCATTAACGTGGATGACATTCCAC
CTGAAGTCAGTGTAAAGCCAATTGGCGGGCAGGCTCCTCCAGTGCCTGCA
GAGGAGTCACCAGCTCCTTCCACACCTGCTTCCCCTCCGCCTGTGCCTAG
TCGTGCAGCTCCAGATCCACCAACCCCCGGCACCCCCGTGGAGCCCACTA
CATCTGTGGCTCCCACATCTCCCCCTAATCCTCTTGTGACGCAAATGCGC
AGCCGCCAGACGGACTACAAAGCTGCTGCACTGCAATCTAAGCGCAGTGG
TGACATATCTACTGCCCTTCAGTTTCTCAAGTGGTCAGGCATTTGACGTA
GTTATAAAATGTGTGAGACGGACAGGAAGTTGATTTGAGTGACATGCCCC
TCCACAGCTGAGTTTCTTGAATTCCTTAAAAAATGCAGAGAGCAGCGCAG
AAGCTGTCCGCAGAGCTACTGCTGCCCAGAAGCCAAACTGATGCTCTGCT
CTGTTCTAGCGCCGCAACAAATATGTTGAAGGCTCTGCACACGTTAAAAA
AAT
UFO09092.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)gd1-RB | 3043 | CG4713-RB | 123..1219 | 9..1089 | 4935 | 97.7 | Plus |
| l(2)gd1-RA | 2989 | CG4713-RA | 123..1219 | 9..1089 | 4935 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11107207..11108132 | 64..983 | 4315 | 99.2 | Plus |
| 2L | 23513712 | 2L | 11107065..11107121 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:48:35 has no hits.
UFO09092.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:35 Download gff for
UFO09092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gd1-RA | 105..1227 | 1..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:53:25 Download gff for
UFO09092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gd1-RA | 114..1236 | 1..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:45 Download gff for
UFO09092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gd1-RA | 114..1236 | 1..1103 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:45 Download gff for
UFO09092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11107056..11107121 | 1..65 | 93 | -> | Plus |
| 2L | 11107209..11108265 | 66..1103 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:53:25 Download gff for
UFO09092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11107056..11107121 | 1..65 | 93 | -> | Plus |
| arm_2L | 11107209..11108265 | 66..1103 | 97 | | Plus |
