UFO09096.5prime Sequence
1118 bp (1006 high quality bases) assembled on 2011-08-10
> UFO09096.5prime
CAGTCGACATGGCCATGTCCAAGGTGATCCGTGTGCTGGAGAAGTCCATT
GCCCCCTCGCCGCACAGCGTATTACTGGAGCATCGGAACAAGAGCGACAG
CATCCTGTTCGAGTCCCATGCGGTGGCCCTGCTGACCCAGCAGGAGACGG
ATGTCATCCGGAAGCAGTACACCAAGGTCTGCGACGCCTACGGATGTCTG
GGTGCCCTCCAACTAAACGCCGGCGAGAGCACCGTGCTGTTCCTGGTGCT
GGTCACCGGCTGTGTGTCCATGGGCAAGATCGGCGACATCGAGATCTTCC
GGATCACACAAACCACTTTTGTCTCGCTACAAAATGCAGCGCCCAACGAA
GACAAGATCAGCGAGGTGCGCAAGCTGCTCAACTCGGGCACCTTCTACTT
TGCCCACACCAATGCCAGTGCATCGGCATCCGGAGCGTCATCGTATCGGT
TCGATATTACGCTTTGCGCCCAGCGACGCCAGCAAACGCAGGAGACGGAC
AACCGTTTCTTCTGGAATCGCATGATGCACATCCACCTGATGCGCTTCGG
TATCGATTGCCAGTCCTGGTTGTTGCAAGCCATGTGCGGCTCCGTAGAAG
TGCGCACCGTCTACATCGGTGCCAAACAGGCCCGTGCCGCCATCATTTCC
CGACTGAGCTGCGAACGGGCTGGCACGCGTTTCAATGTCCGTGGTACCAA
CGATGAGGGCTATGTGGCTAACTTTGTGGAAACCGAGCAAGTGATCTACG
TGGACGGCGATGTTACTAGTTATGTGCAGACGCGAGGATCGGTGCCACTC
TTCTGGGAACAGCCAGGCGTCCAGGTTGGCTCGCACAAGTGAAGCTATCA
CGAGGATTCGAGACATCGGCCGCCGCCTTTGATCGACACATGAGCATGAT
GAGGCAACGTTACGGCTATCAGACGTGGTGAATCTGCTAGGCAGCTCCCT
TGTTGGCAGCAAGGAGGGCGAGGCCATGCTGAGTAATGGAGTTCCAGGCG
TCATCACGGCATGTCAGCCCCACAAGGATGGTGCCCGCATGTGGGTGTTT
GGACTATTCCATCCAGGAGTGTTCCCGGCGCGCAATTTCTCGGGCCTGCA
GCCTCAAGAAACCGGATC
UFO09096.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Synj-RC | 4638 | CG6562-RC | 185..1259 | 9..1093 | 5080 | 98.6 | Plus |
| Synj-RA | 4655 | CG6562-RA | 202..1276 | 9..1093 | 5080 | 98.6 | Plus |
| Synj-RB | 4243 | CG6562-RB | 136..1210 | 9..1093 | 5080 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22081180..22082191 | 9..1020 | 4870 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:48:55 has no hits.
UFO09096.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:16:37 Download gff for
UFO09096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| synj-RA | 195..1213 | 1..1020 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:55:26 Download gff for
UFO09096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| synj-RB | 129..1147 | 1..1020 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:53 Download gff for
UFO09096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synj-RB | 129..1147 | 1..1020 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:53 Download gff for
UFO09096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22081173..22082191 | 1..1020 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:55:26 Download gff for
UFO09096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17968678..17969696 | 1..1020 | 99 | == | Plus |
