UFO09205.5prime Sequence
1116 bp (966 high quality bases) assembled on 2011-08-17
> UFO09205.5prime
CAGTCGACATGTCTGGAACATCGACCTCTGAACGCTCCAACTCCGAAGAC
AGCCCGTTGAATCCCTGCCTAACGGAGGTCCTCAGGAATTGTGCCAACAT
TCAGTCGCTGGAGAGCTTGAACTACGAATATAACGACGTTTTGCTGACCG
AAGACAACGTGGGGAAGATGATTACGCCGAATCCGTATTCCTTTAGTGGC
AACATTTCCATCAGCAGTTGTCCAAGTGAAGATGTATCATTTTCGGAAAG
CATCCTAGAGGACAACGGACGCATTTCGCTGGCCTATGAGAACCTGAAGA
CAATTCCGCGGCGACTGGCCGACAAATTCGCAGCGCAGACCAAGTTTCTC
GATTTGAGTCACAATGATTTCCGAAACTTGAGATTTCTCTCCTTTTTCGA
GGATCTGGACACTTTAATCCTGGACCGCAACGTAAACCTGGACATAAACA
CTTTTCCTTATTTGCCGAGCTTAAGGATCTTGTGGATCAACAATTGCGAT
ATAGCAAATATAACCGATTGGATACACCGCATCGAACGGCACTGTCCTGC
GCTGGATCAGCTCTCTTGCATGGGGAATCCTGGCATCCGCACAGTTTTCG
GGGGCCAAGGACCCCGCGAGTATATACTACAGGTGCTTCCCCAGCTAAAA
TATCTCGATGGACTTCCAACCAGCAGGAATGCAGCTTATGCGACGCTGTC
TTCCTCACAAGGACAGGGTCCGGACTCCACGAGCAATTCGGAAAAGCCTC
CACTCGCATCCGCATTCACTTTCAAGGACATCATCCGTCCAAAGTATTCC
AGAAAATCGCACAGCGGACGGATGTTTGGCACCGGCTCCTCCACAACGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTTCATAA
TTATAATCTTAATCATTATCATATCCACAACTAGCCTAGGAGATCCTGGT
TCATGACTATTGCTTGGATTCTCACCAATAAAAAACGCCCCGGCGGCACC
GACGTTCTGACAATCCAGATGGAGTTTCTGAGGTCATACTGGATTTATCA
CAGGAGTCAAGCGAGCTCGATTCAATTAGCCCCGCCCTGCCCCTCCATCG
CATACTGTTTGTTATT
UFO09205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31274-RB | 1399 | CG31274-RB | 122..959 | 9..846 | 4175 | 99.9 | Plus |
| MESK4-RB | 1488 | CG31447-RB | 112..949 | 9..846 | 4175 | 99.9 | Plus |
| MESK4-RA | 1390 | CG31447-RA | 112..949 | 9..846 | 4175 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16989020..16989455 | 50..485 | 2180 | 100 | Plus |
| 3R | 32079331 | 3R | 16993232..16993667 | 50..485 | 2180 | 100 | Plus |
| 3R | 32079331 | 3R | 16989518..16989880 | 484..846 | 1800 | 99.7 | Plus |
| 3R | 32079331 | 3R | 16993730..16994092 | 484..846 | 1800 | 99.7 | Plus |
| 3R | 32079331 | 3R | 16988925..16988968 | 9..52 | 220 | 100 | Plus |
| 3R | 32079331 | 3R | 16993137..16993180 | 9..52 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:58:28 has no hits.
UFO09205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:36 Download gff for
UFO09205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK4-RA | 89..940 | 1..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:54 Download gff for
UFO09205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK4-RA | 105..956 | 1..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:58 Download gff for
UFO09205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK4-RA | 105..956 | 1..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:58 Download gff for
UFO09205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16988918..16988968 | 1..52 | 92 | -> | Plus |
| 3R | 16989023..16989454 | 53..484 | 100 | -> | Plus |
| 3R | 16989519..16989887 | 485..852 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:54 Download gff for
UFO09205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12814640..12814690 | 1..52 | 92 | -> | Plus |
| arm_3R | 12814745..12815176 | 53..484 | 100 | -> | Plus |
| arm_3R | 12815241..12815609 | 485..852 | 98 | == | Plus |
