UFO09206.5prime Sequence
1111 bp (992 high quality bases) assembled on 2011-08-17
> UFO09206.5prime
CAGTCGACATGGACGAGTCGGAGCTGCTATTCAATCTGTTTTATATTCTG
TTGTGCATGGTGATCATCTACCCGCCAGAGGAGTTCCAACGCCTGGGATT
CACCATTGAACAGTTGTTCGCTCGGTTCCTGGGAGAAGAGTACCTGGACT
TTGTAGGCTACCACCAGCGCCGTACTTCGCTGAATCTCTTCGTGCACTCC
TGTCTGCCCTTCTCCTACTTTCTTATTCATAGGCTCAAGTTCTCCGTCTT
CGCCACGCAGGAGCCCTTGGAGGACTTCGACCTGGACCCGGATTTCCCCA
TGCCCCAGGAAGCGGTAGCGTTTAAAACGCTTACGTGGAAAACCGCCCAG
CGGTTCAGTGTGTTGGCCGTTCTGGCGATGCCCGCTCTGATCTTCAACTG
GCACCAGGAAAACTGGCGTCGGCACCCGATCAGCAAGGCGCTCTCCAAGT
ACTCCATCACGCCGGGCAGCTACAGTGCCGTGGCTAGCGAAATTGGTATA
GAGTTCCGGCAACCGGAAATATACAAGAAGAAGCTAAATTCCATTAGCTC
GGTGATTGCCACGCAGAACTGGATAATAAAAACCACCATGTACAATGTTC
ACTTCGCCCATCAGAGCAACACGTCGCTTAGCGTAGCTAAGGCAGAAACT
TACAACATATCGCATCAAGACCAAAACGACACCTTGCAGATGATAAGCAT
TATTGTACGGCCAATGAGGCAGGTGTGAGCGACTTCCACATACGAATTAA
TGCCCTGTAGTTTAGGATCTAGAGAACCGAGTCCGACGACCAATCGCAAT
TCCCTCCAACATTCAGTTACACCGCAATGTTATAGACCGTTTTGTGGACG
TCTTCAAGGCGCAAGTCGCCCAAATCCCATTTTTCCAGATGATGCTACTA
CGAAAAGTGTTTGCCTGCATGCTAAACGAACCAAACACCAAGATCCACAG
CAGTGTGCCGACTTTGATCGCATGGCGCTCCTTGGCGAACGGGCGTTCCT
GCTCAAACTTGCTACTGCCGGCCCATGGTGGTGTGTAAAGTGCTTAGCCG
CTGTTTGCCCCCTGCCCAAAGGCTTGATTCGGAGGTGGGCGGGACCAAAT
TCACATGCCCA
UFO09206.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14646-RB | 1582 | CG14646-RB | 59..1119 | 7..1059 | 4910 | 98.3 | Plus |
| CG14646-RA | 1694 | CG14646-RA | 59..1119 | 7..1059 | 4910 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4390424..4391059 | 7..642 | 3180 | 100 | Plus |
| 3R | 32079331 | 3R | 4391109..4391523 | 640..1048 | 1480 | 95.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:58:36 has no hits.
UFO09206.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:37 Download gff for
UFO09206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14646-RB | 46..1117 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:59 Download gff for
UFO09206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14646-RA | 55..1126 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:01 Download gff for
UFO09206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14646-RA | 55..1126 | 1..1066 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:01 Download gff for
UFO09206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4390420..4391058 | 1..641 | 99 | -> | Plus |
| 3R | 4391111..4391543 | 642..1066 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:59 Download gff for
UFO09206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 216142..216780 | 1..641 | 99 | -> | Plus |
| arm_3R | 216833..217265 | 642..1066 | 95 | | Plus |
