UFO09209.5prime Sequence
1102 bp (1019 high quality bases) assembled on 2011-08-17
> UFO09209.5prime
CAGTCGACATGAAGAGCTGGCTGAAGATCTCGCTGCTGCTGTGCACGTTT
GGCTTTTTCCGGGAGTTTCGACCTTCGGAGCCGTACGTCACAGAGTACCT
AGCCTCGGATTATGGCAACCTGACGACGGATCAAATCTATCAGGATGTGT
ATCCCTTCGGCACGTACTCGGTGCTGGCCCAGCTGGTAATTGTGTTCCTC
ATCACAGATCTGGTGAGGTACAAACCGGTTATCGTGCTATCGGCACTGGC
TGGCATTACCCTGTTCTCCATGCTTATCTGGACGGAAACCGTGGGAATGC
TGCAGGTGGCCCAAGTGTTTTTTGGCACCTTTACGGCCGCTGAGGTGGCC
TACTACACGTACATGTACGCCAAGGTCAACAAGGAGCAGTATCAGGTAGT
CACGGGCCACACGCGAGCTGCCATCTTGAGCGGCAAGTTCCTCGGCGGCC
TGTTTGCCCAGATTTTGGTGTCCACCGATAGCATGGATTACCGGCAGCTG
CACTACCTCTCGCTGGCCACGCAGCTAATCTCCCTGGCCGTGTCCCTGTT
CCTGCCCAGTGTGCCGCGTAGCCTCTACTTCTACGCGGGTTCCGAGAAGA
TTACCATTGCCGACGGAGAAGAGACCTCACCAAAGTTCTCCTTTGCCAAC
GCATGCCGCCTGCTGTGGTACCACCTCGTTAGTTCCTACTCCAATCCCGT
CGTGCTGCAGTGGAGCATATGGTGGGCATTGGCCACCTGTGGTCAAGTTC
AAGTGATCTCCTACATCCAGTTCCTGTGGAAAGAGGTGGCACCGAATAAG
CTCAGTGTTTACAATGGCGGAGTGGAGGCCGTGCCCACGCTGCTGGGTGC
TATTGGAGCCATTCTGGCGGGCCTGCTGAACTCCAATAAGCGACGGGATC
GTATATGATGGGCATATCCATCTGTGCCGCTGCCCTGGCGCTCTGCTCAT
CTATGCCGCAGAACGCAGTTGATCTGGGTGGCCTACGTGAACTATGTGCT
TTTCTGCACGTATTCTTCTTCATCATCACGGTGGCGGGTGCCGTTGTGCC
GAAATCTGGTGGAGGACCGGTTTCGCTTGAATCTCGTATTCAATAACGTG
GT
UFO09209.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17036-RB | 1680 | CG17036-RB | 229..1310 | 5..1080 | 5140 | 98.8 | Plus |
| CG17036-RA | 1663 | CG17036-RA | 127..1208 | 5..1080 | 5140 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12699769..12700518 | 754..5 | 3750 | 100 | Minus |
| 2L | 23513712 | 2L | 12699373..12699706 | 1080..753 | 1250 | 95.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:58:45 has no hits.
UFO09209.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:37 Download gff for
UFO09209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17036-RA | 227..1313 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:03 Download gff for
UFO09209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17036-RA | 125..1211 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:05 Download gff for
UFO09209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17036-RA | 125..1211 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:05 Download gff for
UFO09209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12699370..12699706 | 753..1084 | 95 | <- | Minus |
| 2L | 12699771..12700519 | 1..752 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:03 Download gff for
UFO09209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12699370..12699706 | 753..1084 | 95 | <- | Minus |
| arm_2L | 12699771..12700519 | 1..752 | 99 | | Minus |
