UFO09211.5prime Sequence
1157 bp (997 high quality bases) assembled on 2011-08-17
> UFO09211.5prime
CAGTCGACATGACCACGCGTGGAATTCGGTGCAAGAAGTCCACATTGACG
GAGTTGAAAATCGCCGTGATCGGAGCGCCCAGTGTTGGCAAAAGCGCCCT
AATTGTGCGTTTCTTGACAAAGCGTTACATCGGGGAGTACGATCATCAGA
CTGAGAATCGCTACAAGCACGAGGCTATGGTGGATGGCGAACCGGTGCTC
TTTGAAATACTAGACACATGTCCCAAGGCTGAAGACGAATACCCCAATGC
AGCTGAGCTCGTTCAGTGGGCCGATGGCCTATTGCTGGTCTACTCGATAA
CAGATCGCAAGAGTTTCAACTATATACGCCGTGCCAAATCCGATCTTCAG
TCCGATACACCCGTCCAACTTTGTGCCAACAAAGTGGATATGGTGCACCT
GCGCCAGGTGAGCCGCGACGAGGGCGAAATCCTGGCCAAGGACTTTGAGT
GCAAGTTCAGCGAGGTCTCCGCCGCCGACCACGTCGACCAGGTGGCCGAG
GTTTTCAACGAGCTGTGCAAAGAGGTGCTGGCCTCCAAGCGCAAGTCCAA
GCAGAGTCTGCTGGAAAGGATGCTCGGTGGAGCACGACCCTACAGCCGAG
GGAAGAGCGACAGCAATTTGCCAAAAGACGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATAGGAGTTCTGAGGTCATTACTGGAATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGAAGCCATCACAAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCCGCCTTGCGTAT
AATAATTTGCCCATGTGAAAACGGGGCGAAAGTGTCCATATTGCACGTTA
ATCAAACTGTTGAACTCACCAAGGATGCTGAAACGAAAACATATTCTCAA
TAACCTTAAGGAAAAAGGCAGTTACCGGTACACGCCCATCTTGCCAAATA
TATGTGT
UFO09211.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8519-RA | 1303 | CG8519-RA | 624..1244 | 9..629 | 3105 | 100 | Plus |
| CG8519-RB | 709 | CG8519-RB | 117..650 | 96..629 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6708538..6708941 | 226..629 | 2020 | 100 | Plus |
| 3L | 28110227 | 3L | 6708348..6708480 | 96..228 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 6705483..6705570 | 9..96 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:57:43 has no hits.
UFO09211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:34 Download gff for
UFO09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8519-RA | 618..1245 | 9..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:33 Download gff for
UFO09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8519-RA | 624..1251 | 9..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:42 Download gff for
UFO09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8519-RA | 624..1251 | 9..635 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:42 Download gff for
UFO09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6705483..6705570 | 9..96 | 100 | -> | Plus |
| 3L | 6708349..6708479 | 97..227 | 100 | -> | Plus |
| 3L | 6708540..6708948 | 228..635 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:33 Download gff for
UFO09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6698583..6698670 | 9..96 | 100 | -> | Plus |
| arm_3L | 6701449..6701579 | 97..227 | 100 | -> | Plus |
| arm_3L | 6701640..6702048 | 228..635 | 99 | == | Plus |
