UFO09212.5prime Sequence
838 bp (820 high quality bases) assembled on 2011-08-17
> UFO09212.5prime
CAGTCGACATTTCCAAGATTTGGGAGGAGAAGAAGCGGGCCCTCAAGGCA
CTGGACTACTTTGACTTTCTCGATGACGATCAGATCGTGGAAGCTTGCCG
ATATGGGAGGCTGAAGCAATTCGATCCACTGGATACCATATTCTGTGAGG
ATATAGGATCCATGACCAATGTCCACTTCGTGCTCAGTGGAGAATGTCTG
ATACTCCAGTGTCTGAATATAAAGGTTACTATGAAAAGGGGTAAAAAGGT
ATATGATCTTTTGCCGGCGTCGGAAGGCGATGTGTCCAAAATGTTTAGAA
AAGCCGTGAGATCAACATTTTCCTCGCAAAGTACCAACGAAGATCAGTCA
AAAATAGATATTCTTGATCTTGTGGCAAGTACGAGTTCCAGTTCCACGGG
AGATGCGCAAAAAAGTGCTCTCAACCGCAAGACACCCACATTTGAAAGCC
ATTTCATCGATGTGGGTACCATAACATTTGGAGGCATTTTCGGCTTGGGC
GAGAAAAATGGAAAATCGCGTGATAATGGCAAGGAGCACGGTTCAATGCC
TGATACTTCCCAGATTTTTCCTGCTGGAAAAGAAACAAAATCCCGGCAAT
GTTTGGGAGCGCAGACTGTTTGTATGTGGGCGTCATGGTTCCATCCAGGG
AAGCCCTTTTTGCCCACTATCGTAAAGCTTGCGACTGGGAAGAATTCAAA
AACGACCTATTTTCGAGACCTTGAAGCCCTCCGATATGACATCACACACA
TCGAAGACGTTTCCATAATTTGCAGAATTTGTAGAATCACCAGAGGATCT
CAATGCAGCTTTCTAGACATTCCGTTTGGGCGCGCTGG
UFO09212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14693-RC | 1738 | CG14693-RC | 687..1477 | 13..804 | 3770 | 98.9 | Plus |
| CG14693-RB | 1153 | CG14693-RB | 102..892 | 13..804 | 3770 | 98.9 | Plus |
| CG14693-RF | 2195 | CG14693-RF | 793..1212 | 13..432 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10811842..10812215 | 804..430 | 1560 | 97.3 | Minus |
| 3R | 32079331 | 3R | 10812798..10813006 | 431..223 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 10813058..10813202 | 226..82 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 10813465..10813535 | 83..13 | 355 | 100 | Minus |
| X | 23542271 | X | 16008270..16008377 | 441..549 | 195 | 80.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:57:53 has no hits.
UFO09212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:34 Download gff for
UFO09212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14693-RC | 681..1482 | 7..811 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:38 Download gff for
UFO09212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14693-RB | 96..897 | 7..811 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:44 Download gff for
UFO09212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14693-RB | 96..897 | 7..811 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:44 Download gff for
UFO09212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10811837..10812213 | 432..811 | 96 | <- | Minus |
| 3R | 10812798..10813004 | 225..431 | 100 | <- | Minus |
| 3R | 10813060..10813200 | 84..224 | 100 | <- | Minus |
| 3R | 10813465..10813541 | 7..83 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:38 Download gff for
UFO09212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6637559..6637935 | 432..811 | 96 | <- | Minus |
| arm_3R | 6638520..6638726 | 225..431 | 100 | <- | Minus |
| arm_3R | 6638782..6638922 | 84..224 | 100 | <- | Minus |
| arm_3R | 6639187..6639263 | 7..83 | 97 | | Minus |
