UFO09213.5prime Sequence
1129 bp (975 high quality bases) assembled on 2011-08-17
> UFO09213.5prime
CAGTCGACATGGCTCATTCGAACAAGGCTCGCAAAGCAGCCAAAGAGGCA
AACGCCAAGAAGTCTGCGGGATCGGGAACAGAGAGCAAACCGGAGCACGT
AAAGATACATGGCCCAGGCGATCGTAGTGCAGGAGTTCTGACTGGCGACC
AGTTCCTGGAGAGCTTGCTCCAGACTCTCTACAGGTCATGGCTTCAAATC
TGCCGCCTGGCAGATTTTGTGATGTCCGAGCTAGGTGGAAATGATTTCCT
GGAGGCCACCGCGGCCTGGTGCACCCGGAATCCGCACGTTGCTATCTGCC
TGCTAGCTGGTGGTCTTGTATTCATGCTGCCCTTCCTTATAATATTTGGG
TTTGGAATAGCCACCATGGTTATGACCTTTACAGGTTTGCTGGTGCTAGA
AGGCACACTCCTGACCATTGTGTCCATGGTGTTCTTCGCCTGCCTGGGAG
GACTAGTCATAATGGTACCTCTCTTCGGTGTCGCCGCTGTTGCTGCCTAT
TTCGGATTTGCCCAGGTGTATGGCCTATGTGATGGAATAGAGATCCATAA
GAGCGCGTGGGTCATGTTCTTTAGGGATCAACGGAAGGCCGGCGATCCGC
CGCCAGCTGCTGTGACCATAACCGATGAACCCACTTCTACGACTGCAGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAGCGAGCTCGATATCAAATTACGCCCCCGCCCTGCCAC
TCATCGCAGTACTTGTTGTAATTCATAAGCATTCTGCCGACATGGAAGCC
ACCACAAACGGCATGATGAACCTGAATCCGCCAGCGGCATCAGCACCTTG
TCGCCTGCGTAAAATATTTGCCATGTGAAACGGGGGCGAAGAGTTGTCCA
TATTGCCACGTTTAATCAAACTGGTGACTCCCCCAGATTGCTGAAACGAA
AACAAATTCCAATATCCTTTAAGAATGCC
UFO09213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32803-RA | 818 | CG32803-RA | 108..748 | 7..647 | 3190 | 99.8 | Plus |
| CG32803-RC | 905 | CG32803-RC | 199..835 | 11..647 | 3170 | 99.8 | Plus |
| CG32803-RD | 800 | CG32803-RD | 108..730 | 7..647 | 2910 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1900769..1901015 | 647..401 | 1235 | 100 | Minus |
| X | 23542271 | X | 1901064..1901277 | 403..190 | 1070 | 100 | Minus |
| X | 23542271 | X | 1901436..1901615 | 190..11 | 885 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:59:11 has no hits.
UFO09213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:39 Download gff for
UFO09213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32803-RA | 129..778 | 1..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:17 Download gff for
UFO09213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32803-RA | 102..751 | 1..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:15 Download gff for
UFO09213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32803-RA | 102..751 | 1..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:15 Download gff for
UFO09213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1900765..1901013 | 403..651 | 99 | <- | Minus |
| X | 1901065..1901277 | 190..402 | 100 | <- | Minus |
| X | 1901437..1901620 | 1..189 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:17 Download gff for
UFO09213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1795098..1795310 | 190..402 | 100 | <- | Minus |
| arm_X | 1795470..1795653 | 1..189 | 96 | | Minus |
| arm_X | 1794798..1795046 | 403..651 | 99 | <- | Minus |
