UFO09215.5prime Sequence
1123 bp (1021 high quality bases) assembled on 2011-08-17
> UFO09215.5prime
CAGTCGACATGGACACATTGCCGGGAAGTTCCTCCGCCCTGAGCACAGAC
GACGAGCAAACTGCCCTGATTTCCCCCACTGTGGTGGCCGGCTTAAAGAA
CCTGGGTGCCATCATTTCGCTGCCACTCACCAAACTGCTCATTGCCAATT
CCTTGAAACTGACGCTCCATCCAGATGCCACCATTGCTCCGGTGCCCGAG
CTGTATGCCAAGAACGCCGCCTGCGCCAAACAGAGCGAGTACGCGGTGGT
CACCCTCTTCGCCCTGGGCACCAAGCACGGCTGGGATGGCCTTCAATTGC
GCCAGCAGCTGGAGCAACTCAACCTCGATGCAGCTGCCGTCGACGAGCTG
AGTCGCGTTTACGAGGACAGCCGCAAGGATCTAATTCTCCGCCAACTGCA
AATAGGCCATAGCTTTCCGCACATTACCGACATCCAGTGGCGCATCGTGT
GCGACGTGAAGTCTTCCACCTCGGACTGCAGCACGGGCGCGGCCTGCTTC
CACATCAATCTGGGCAACTTTCGGCAGAGCAGCGGCGAGCGGGTGACCAT
CGTTGAGTTTGTCTGCAATGCCGAGGAGCTGCAGTCGCTAATCAATCGTC
TCAAGGAGATCGAGCGGCACTGCCAACAGATGGCCGTGGTCGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCACAGGA
GTCCCAGCGAGCTCGATATCAAATTACGCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGAAGCATCACAAAACG
CATGATGATCTTGAATCGCAGCGCATCAGCACTTGTCCGCCTTGCGTATA
ATATGCCATGTGAAAACCGGGGGCGAAGAAGTTGTCATATGCCACGTTAA
TCAAACCTGTGAACTCACCAAGATGCTGAAACGAAAACTATTTCTATACG
TAGAAATAAGCAGTACGTAACGC
UFO09215.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12106-RA | 1372 | CG12106-RA | 137..771 | 7..641 | 3175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9194272..9194732 | 181..641 | 2305 | 100 | Plus |
| X | 23542271 | X | 9194034..9194207 | 7..180 | 870 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:59:16 has no hits.
UFO09215.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:40 Download gff for
UFO09215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12106-RA | 86..727 | 1..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:18 Download gff for
UFO09215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12106-RA | 130..771 | 1..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:17 Download gff for
UFO09215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12106-RA | 130..771 | 1..641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:17 Download gff for
UFO09215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9194027..9194207 | 1..180 | 97 | -> | Plus |
| X | 9194272..9194732 | 181..641 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:18 Download gff for
UFO09215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9088060..9088240 | 1..180 | 97 | -> | Plus |
| arm_X | 9088305..9088765 | 181..641 | 100 | == | Plus |
