UFO09216.5prime Sequence
1132 bp (1009 high quality bases) assembled on 2011-08-17
> UFO09216.5prime
CAGTCGACATGGGAATCGGAATGCTTGATTCCGAAGAAAGCAGCTCCTCA
GCCCTCTCGGCCATCGCTTTGGCGGTTAGCGCCACCAGCGACGACAACTC
AAATGAGACGACCCCGTGCGCCAGTGTGTCGCGCATGGCGCACCAGCTAC
AGCACACGCAACGGCTAAGTCTGGGCTCTACGGGGGACATCACACTGGAT
AGCCCAGCTGTGGAGGATTCACTGTCGATGTCCCGTCAATCGGCCGAGAA
GCTGCAGATTCTGGCGCAGGCTAAGCGCTCGTCGTTGGGTTCTGAAGGTA
GCGGCAATTCAAACTCGCCCAGCAAACGTTTGCGCAACCCCCTGGCTGCA
GTCACCTGTAACAACCAGATTGATGGGACTGCTTCGCTCAATTTTCAGCC
ATCAACCAGCAGGTTGGCGCAAGTTCGCCAGGCAAAAAAGCCCTCGACAA
CAAATATTACAACCCGAATAGTGGCAGCGGACAGTTTCTTTGTGTTTCGC
ACCCCGGCCATGAGTGCCCACATCAACAGCGGCATAAACTACTTTGAAAG
ACTTTCAGACGAAATACTACTTGACATCTTTAAGTGGCTCCCGAAGAAGA
CGCTGCTGCGCATGGCTACCGTTTGTCGACGCTTTAACCGCTGCTCTCGC
GATGAGACTTTGTGGACAAGGCTAGATTTGGGTTTGCGGACAATTAGACC
AGGTGCCCTCGAGCAAATTGTACGGCGGGGAGTCCTTGTAATACGTCTGG
CCCAGACTAGTATCCAGGAGCCCGCATTTGCACCATATACAGAAGTGTTT
AGGACCCGATTACAATATCTTGACCTGAGTATGGGCTTCCATCACCCGAA
GCTCACTGCTGACACTATTGTCCCACTGCCGCCCAGCTAAAGAAAATAAG
CTTAAAGATATTGAGCTCGATGATGACATCTGTGCAGAGATCGCAAAGAT
GAAGCTTTGGAAGGCGGTCAATCTGACTATGGCTAGGTGGCCTGACGTCC
AACATGGTTCGCCTTGATTGATGAGTCACTTACCAAGCTAAGCAGCTAAA
CATATCGGTGAACTGACCTTAGGGGCGGATGCCTGTTACGCGTGGTTTAC
CACATTCCCCACCTTAAATCGGCTCAATCGCT
UFO09216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 249..1367 | 9..1128 | 5045 | 97.4 | Plus |
| Skp2-RA | 2412 | CG9772-RA | 249..1367 | 9..1128 | 5045 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336469..4337221 | 761..9 | 3765 | 100 | Minus |
| 3R | 32079331 | 3R | 4336115..4336408 | 1057..762 | 960 | 94.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:59:29 has no hits.
UFO09216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:40 Download gff for
UFO09216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-RA | 252..1346 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:25 Download gff for
UFO09216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RB | 312..1406 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:24 Download gff for
UFO09216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 240..1334 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:24 Download gff for
UFO09216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4336076..4336408 | 762..1097 | 93 | <- | Minus |
| 3R | 4336469..4337228 | 1..761 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:25 Download gff for
UFO09216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 161798..162130 | 762..1097 | 93 | <- | Minus |
| arm_3R | 162191..162950 | 1..761 | 99 | | Minus |
