UFO09217.5prime Sequence
1125 bp (941 high quality bases) assembled on 2011-08-17
> UFO09217.5prime
CAGTCGACATGTGCGACTACCAGATGGAGTACTCCTTTATTTTTGAAGAC
AGCTCCTGCGAGGGCGATGCCTCGATGGCATCCTACGACAATGGATTCGA
GTCCATGTGGCATCAAGTGCGCGAGGAGTTGCAAAGGGAGCGGGAGATGA
ATGAGCTCTGCCAGGTTTTCCAGCAAAACTTGAGCCTGAGTCCGCCGGTC
ATCGCGGATAGATGGAGATTCCCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA
TAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCT
TGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCA
GAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGT
GAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAAT
CCCGGATGAGCATTCATCAGCGGGCAAGATGTGAATTAAGGGCAGGATGA
ACTTGTGCTATTTTCTTACGGTCTTAAAAGGCCGTATATTCAGCTGAACG
GCTGGTTAAAGGTACTTGGATCAACTGGACTGAAATGCTTCAAAATGTCT
TTACGAGGCATTGGGATTATACACGGGTGCATACCGGGATTTTTTCTCAT
TTGAGCTCTAAGCTCTGGAAGAGAT
UFO09217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgc-RD | 643 | CG32885-RD | 27..239 | 9..221 | 1065 | 100 | Plus |
| pgc-RA | 1211 | CG32885-RA | 595..807 | 9..221 | 1065 | 100 | Plus |
| pgc-RC | 686 | CG32885-RC | 70..282 | 9..221 | 1065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22332197..22332409 | 9..221 | 1065 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 790..857 | 123 | 68.1 | Plus |
UFO09217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:41 Download gff for
UFO09217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgc-RA | 549..766 | 9..228 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:30 Download gff for
UFO09217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgc-RC | 70..287 | 9..228 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:26 Download gff for
UFO09217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgc-RC | 70..287 | 9..228 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:26 Download gff for
UFO09217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22332197..22332409 | 9..221 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:30 Download gff for
UFO09217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18219702..18219914 | 9..221 | 100 | == | Plus |
