UFO09218.5prime Sequence
1146 bp (957 high quality bases) assembled on 2011-08-17
> UFO09218.5prime
CAGTCGACATGAGTCAGTCTTGTATACCAGTGAGCGCAAAGATGTCGAAG
GCAAAGAAGGTTTTGGATGAAGCCCGAGAAACTCACAATCCCGAGTTGGA
TTTGGCCGACAAGGGGCTGTCGTCCTTCGAGGAGTTGCCCGGACTGTTCA
ACATGTCCAACATCACGCGCTTGACCCTGTCCCACAACAAGATCAGCGTA
ATCAGTCCGGGAATCGCGAACCTACTGAATCTGGAGATCCTGAACCTCTC
GAACAACCAGCTGACCGAACTGCCCGTTTCGCTGTCGTCCATGCCAAAGC
TACGCATCCTCAATGTGTCCATCAATCGGCTGATAAATCTTCCTCGCGGC
TTTGGAGCCTTTCCGGTGCTGGAAGTGCTCGACCTGTCCTACAACAATCT
CAACGAACAGGTCCTGCCTGGTAATTTCTTTGGTATGGAGACACTGCGTG
CTCTGTATCTGGGCGACAATGACTTCGAGTATATACCGAAGGAGGTGGGT
CAGCTGAAGAATCTGCAGATACTCGGATTGCGTGACAACGATCTTCTGGA
ATTGCCCCGCGAAGTTGGGGATTTGGTGCGACTGCGGGAGCTACATATTC
AAAACAATAGGCTGCAGGTGCTGCCACCAGAGATCGCCCAGTTGGACCTA
CTGAGCAACAAGTCGGTCATGAAGATGGAGGAGAATCCCTGGGTCAATCC
CATCGCCGAGCAATATCTGCTGGGCATTAGTCACGTCATCGACTACCTCA
AAACGGAGATCTATAAGATCATCTACAACCGCCCACTTGCAAGCAGGACG
CAGTGGACCGCCGCCACCCCAAAGCTGACAAAAGCAAGAAGGCCTCTCGA
ATTCGCGCAGCAAGCTTTCTAGACCATTCGTTTGGCGCCGCGGGCCCAGG
TAGTTGGTCATAATCATAATCATATTCATAAATCATAATCACAACTAGCC
TAAGGAGATCCTGGTCATGACTAGTGCTTTGCATTCTACACAATAAAAAA
CGCCCGGCGGCAACGAGCGTTTCTGAACAAATTCAGATGGAGTCTTGAAG
TCATTACTGATCTATCAAAAGAAGTTCAAGCGAAGCTGATATCAAATATA
GCCCCGCCCTGCCACCACTCCAGATTGTGTGGTAATTCTATAGCAT
UFO09218.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ics-RC | 1716 | CG9031-RC | 606..1454 | 9..859 | 4190 | 99.6 | Plus |
| ics-RB | 1063 | CG9031-RB | 25..873 | 9..859 | 4190 | 99.6 | Plus |
| ics-RA | 1335 | CG9031-RA | 297..1145 | 9..859 | 4190 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13639860..13640481 | 769..148 | 3095 | 99.8 | Minus |
| 2L | 23513712 | 2L | 13641110..13641248 | 147..9 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 13639709..13639796 | 859..770 | 350 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:59:48 has no hits.
UFO09218.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:42 Download gff for
UFO09218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ics-RA | 17..873 | 1..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:33 Download gff for
UFO09218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ics-RA | 289..1145 | 1..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:30 Download gff for
UFO09218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ics-RA | 289..1145 | 1..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:30 Download gff for
UFO09218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13639709..13639796 | 770..859 | 97 | <- | Minus |
| 2L | 13639860..13640481 | 148..769 | 99 | <- | Minus |
| 2L | 13641110..13641256 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:33 Download gff for
UFO09218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13639709..13639796 | 770..859 | 97 | <- | Minus |
| arm_2L | 13639860..13640481 | 148..769 | 99 | <- | Minus |
| arm_2L | 13641110..13641256 | 1..147 | 97 | | Minus |
