UFO09222.5prime Sequence
1150 bp (1007 high quality bases) assembled on 2011-08-17
> UFO09222.5prime
CAGTCGACATGGAGCAACCAGCAACTGGAGGCGCCGCTGTCCAACCGGGC
GTGTCCCCAGCGCACATCCACGACACGGATCAGCTCCTGGACCCCGTCCT
CTTCTCCAACGACAATGGAAGCTACAAGCTAAATACAGTGCCCGCATTTA
GCCTTCATCTGGTTATCTCCACTGCAATCTCCATTGTGGGGATCGTACTT
GCAGCCTCGTTTCCAACCGATCGGCGCTGCGATGCATACTTTATAATGCT
CTACCTACGGGCCACCTTCTGGGTCATCACATATCTCTTCGATCACTTCG
TAAAGAAGCAACACGACAATCTACGCATGCAGGGCTATCACGACTTTCAC
CGCGAGACTAACATGCAGAAGGGGATTCCCCTTCAGCTGGTATCCCTGTG
GAACTCCATGCTGCTTGCTGTCCAGGCCCTAATCCACCACTTCTATGCGG
AGAACTTTTGGGAACATTGCGCCGCCGGGTGGCTGTCGCCGGTCAGCTAT
GTGACCGCCTTCACCGTGGCCGAGAATCTGGTGCTGGCCGTTTCCCACAG
CTTATATATTGACAAGGTGCGTAAGTTCAACAGCGCCAAGCTGGCTCCGG
ATGTTTTGCGTGGTGCGGACCGCGCCGGCGGTTCCCTGGGCCTCATGCAA
CCAGGAGGCGACACAGAAGAGCTTCTGGAGAAGCAAGCCGACCTTATCGC
CTATCTGCGTGACCATACACACAAGCTCAACCAGAAACTGCATCAAATGC
AGACCAAACGTGCGACCAGTGAGGGCACCACAAATTCCTGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACAATAAAAAACGCCCGGCGGCAACGGAGCGTTCTT
GAACAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGT
CCAAGCGAGCTCGAATATCAAATACGCCCGCCCTGCCACTCATCGCAGTT
ACTGTGTTAATTCATTTAGCATTCTGCCGACATGGAAGCCATCACACGGC
CATGATGACCTGACGCAGCGCATCAAACTGTCTCCCTGCCTATATAATTG
UFO09222.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7523-RA | 1134 | CG7523-RA | 99..878 | 9..789 | 3865 | 99.7 | Plus |
| CG14322-RE | 5857 | CG14322-RE | 5272..5499 | 789..561 | 1105 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17670066..17670342 | 561..285 | 1385 | 100 | Minus |
| 3R | 32079331 | 3R | 17669400..17669627 | 789..561 | 1080 | 99.1 | Minus |
| 3R | 32079331 | 3R | 17670655..17670797 | 151..9 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 17670405..17670540 | 284..149 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:58:55 has no hits.
UFO09222.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:38 Download gff for
UFO09222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7523-RA | 90..882 | 1..794 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:08 Download gff for
UFO09222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7523-RA | 91..883 | 1..794 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:08 Download gff for
UFO09222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7523-RA | 91..883 | 1..794 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:08 Download gff for
UFO09222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17670655..17670802 | 1..151 | 97 | | Minus |
| 3R | 17670066..17670342 | 285..561 | 100 | <- | Minus |
| 3R | 17670405..17670537 | 152..284 | 100 | <- | Minus |
| 3R | 17669395..17669626 | 562..794 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:08 Download gff for
UFO09222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13496127..13496259 | 152..284 | 100 | <- | Minus |
| arm_3R | 13496377..13496524 | 1..151 | 97 | | Minus |
| arm_3R | 13495117..13495348 | 562..794 | 98 | <- | Minus |
| arm_3R | 13495788..13496064 | 285..561 | 100 | <- | Minus |
