UFO09225.5prime Sequence
1114 bp (927 high quality bases) assembled on 2011-08-17
> UFO09225.5prime
CAGTCGACATGTGGCGGCCGAGTATCTCGAATTGCGTGTGGAGCACCCTG
CTCCTGGCCATTTTTGTGCATCAAACGCTAGCACAGCGAACCCCGACCAT
ATCCTACATCACGCAGGAGCAGATCAAGGATATCGGCGGCACAGTGGAGT
TCGATTGCTCCGTCCAGTATGCCAAAGAGTACAACGTGCTGTTCCTGAAG
ACGGACAGCGATCCCGTCTTCCTCTCCACGGGCTCCACGCTGGTCATCAA
GGATTCGCGCTTCTCGCTGCGGTACGATCCCAACTCGTCCACCTACAAGC
TGCAGATCAAGGACATTCAGGAGACGGACGCGGGCACCTACACCTGCCAG
GTGGAGTTCGCACCAGTGATCACCGTGCCGCGTCCTCGTTTGGGACAGGC
TCTGCAGTACGACATGGACTTGGAGTGCCACATTGAGGCCTATCCGCCAC
CGGCCATTGTGTGGACCAAGGACGACATCCAGCTGGCCAACAACCAGCAC
TACAGCATCTCGCACTTCGCCACCGCCGACGAGTATACCGACTCGACGCT
CCGTGTGATCACCGTTGAGAAGCGCCAGTACGGAGATTATGTGTGCAAGG
CCACCAATCGCTTTGGAGAGGCGGAGGCGCGCGTCAATCTCTTCAAGACG
ATCATTCCCGTGTGCCCACCGGCCTGTGGACAGGCGTACATCGCCGGAGC
CGATGATGTGTCCGCCACTTCTTTCGCTCTTGTGGGCATCCTGACAGCGT
TGCTCTTCGCCAGAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATGATCATAATCATAATCACAGCTA
GCCTAGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCATAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATATCAAATTCGCCC
CGCCCTGCACTCATCGCAGTACTGTTGATATCCATTAGCATTCTGCGACA
ATGAGAGCATCATAACGCAATGATGATACTGAATCGCAGCGCATCCGACC
CTTGTCGCCTTGCT
UFO09225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lac-RA | 2156 | CG12369-RA | 989..1404 | 349..764 | 2005 | 98.8 | Plus |
| Lac-RA | 2156 | CG12369-RA | 328..673 | 9..354 | 1715 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12464463..12464878 | 349..764 | 2005 | 98.8 | Plus |
| 2R | 25286936 | 2R | 12453517..12453862 | 9..354 | 1715 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:00:18 has no hits.
UFO09225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:43 Download gff for
UFO09225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lac-RB | 327..1087 | 9..770 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:47 Download gff for
UFO09225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lac-RA | 328..669 | 9..350 | 99 | -> | Plus |
| Lac-RA | 991..1409 | 351..770 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:43 Download gff for
UFO09225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lac-RA | 991..1409 | 351..770 | 98 | | Plus |
| Lac-RA | 328..669 | 9..350 | 99 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:43 Download gff for
UFO09225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12453517..12453858 | 9..350 | 99 | -> | Plus |
| 2R | 12464465..12464883 | 351..770 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:47 Download gff for
UFO09225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8341022..8341363 | 9..350 | 99 | -> | Plus |
| arm_2R | 8351970..8352388 | 351..770 | 98 | == | Plus |
