UFO09226.5prime Sequence
1126 bp (983 high quality bases) assembled on 2011-08-17
> UFO09226.5prime
CAGTCGACATGCTTTTCGATGGCGCAACCGGCAATGGGCACGGTCAGGGC
CAGAATACCCTGAATCCATTGGGGCCAGGCCAGGAGGAGCCCGCCCTATG
CGAGCAGTACTATCTGCTGGGCGATGGTTCCATCATTCTGCGCAACCATT
CCATCGACTTGTCGAATCCGCCCCTGAAATCGCGCTGCTGCCAGCTCCCA
ACACTCATCCACGACATATGCGTCAACTGCGTGATGGATCTCTGCGAGGA
GTGTGGCTACTCCTGCGGCGAGTGCGCCAAGTTTATTTGCCGCAACTGCG
TGACTTTATTTGGTAATCGAATTGAAGAAGAGGAGGCTCCGCTGTGCGAG
CACTGCCAGATGTTCCTCAGCGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA
CTGGTGAAACTCACCCAGGATTGGCTGAGACGAAAAACATATTCTCAATA
AACCCTTTAGGGAAATAGCCAGGTTTTCACGTAACACGCCACATCTTGCG
AATATATGTGTAGAAACTGCCGGAATCGTCGTGTATTCACTCCAGAGCGA
TGAAACGTTTCAGTTTGCTCATGAAAACGGTGTAACAGGTGAACACCTAT
CCCAATATCACCAGCTCAACCGTCTTTCATTGCATACGAATTCGAATGAG
CATTCATCAGGCAGACAAGATGTGAATTATGCCGGAATAAACCTGGGCCT
AATCCTACCGAGTCCTTGACACAAGG
UFO09226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32817-RB | 580 | CG32817-RB | 142..504 | 9..371 | 1815 | 100 | Plus |
| CG32817-RC | 837 | CG32817-RC | 399..761 | 9..371 | 1815 | 100 | Plus |
| CG32817-RA | 532 | CG32817-RA | 94..456 | 9..371 | 1815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 479644..479945 | 9..310 | 1510 | 100 | Plus |
| X | 23542271 | X | 482132..482433 | 9..310 | 1480 | 99.3 | Plus |
| X | 23542271 | X | 477621..477931 | 9..310 | 1040 | 89.7 | Plus |
| X | 23542271 | X | 480030..480090 | 311..371 | 305 | 100 | Plus |
| X | 23542271 | X | 482518..482578 | 311..371 | 290 | 98.4 | Plus |
| X | 23542271 | X | 478013..478073 | 311..371 | 230 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:00:28 has no hits.
UFO09226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:44 Download gff for
UFO09226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32817-RA | 71..441 | 1..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:51 Download gff for
UFO09226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32817-RA | 86..456 | 1..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:47 Download gff for
UFO09226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32817-RA | 86..456 | 1..371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:47 Download gff for
UFO09226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 479636..479945 | 1..310 | 99 | -> | Plus |
| X | 480030..480090 | 311..371 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:51 Download gff for
UFO09226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 373669..373978 | 1..310 | 99 | -> | Plus |
| arm_X | 374063..374123 | 311..371 | 100 | == | Plus |
