UFO09228.5prime Sequence
1132 bp (994 high quality bases) assembled on 2011-08-17
> UFO09228.5prime
CAGTCGACATGACCATCAAAAATTCGACTTGCTTTCGACATATTTGGGTT
TCCACAGATGACAAACGAATTGCCATTGAGGCACAAAAGTATGGTGCCAT
AATACATCATCGGCCTGAGAAATTCGCCAGAGACGACACTCCTTCACTTC
ATGCCATTTCGGAGTTCCTAGATGTTCATAGAAGTATTCATGACTTTGCT
CTATTCCAATGCACATCTGTATTCCTGAAAACCAAGTATATTCAAGAGGC
TGTTCGAAAGTTTGAGTCCCATGACTGTGTTTTTGCCGCTAAGAGATCAC
ATTATCTGCGATGGAAGGTGGTCGATGGTGAATTGATGCCAGCGGAATTC
GATTTGAGTGCCAGGCCAAGACGCCAAGATTGGCAGGGTGATATTGTAGA
GACAGGAATGTTTTACTTCTCGAGGAGGAAACTGGTGGACAGTGGGCTAC
TGCAAAACAATAGGTGCTCCGTTGTGGAAATCGATGCCAAGGATAGTCTG
GAAATTGACTCTAGCCACGATCTGACTCTAGCCAAATACATCTTAAGTAG
TGAAACAAAAACCGAGTTAGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATC
AAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGACCTGATCGC
AGCGGCATCAGCACTGTCGCTTGCGTATATATTTGCCCATGTGAAACGGG
GCGAGAGTGTCATATTGCACGTTTAATCAAACTGTGAACTCACCCAGGAT
GCCTGAAACGAAAACATATTCTCAATAACCTTTAGGAATAGCCAGGTTCA
ACGTAACCGCCCAAATCTGCAATTATGTGTAACTGCGATCCGCTCTCGGA
TTCACTCAGGCGGGATAACGTTCAGTGCATGG
UFO09228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csas-RA | 758 | CG32220-RA | 153..713 | 9..569 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19988072..19988347 | 569..294 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 19988401..19988605 | 295..91 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 19988662..19988743 | 90..9 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:00:37 has no hits.
UFO09228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:45 Download gff for
UFO09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csas-RA | 153..713 | 9..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:56 Download gff for
UFO09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csas-RA | 153..713 | 9..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:51 Download gff for
UFO09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csas-RA | 153..713 | 9..569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:51 Download gff for
UFO09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19988662..19988743 | 9..90 | 100 | | Minus |
| 3L | 19988072..19988345 | 296..569 | 100 | <- | Minus |
| 3L | 19988401..19988605 | 91..295 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:56 Download gff for
UFO09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19981172..19981445 | 296..569 | 100 | <- | Minus |
| arm_3L | 19981501..19981705 | 91..295 | 100 | <- | Minus |
| arm_3L | 19981762..19981843 | 9..90 | 100 | | Minus |
