UFO09232.5prime Sequence
1111 bp (991 high quality bases) assembled on 2011-08-17
> UFO09232.5prime
CAGTCGACATGAGGGAATGCATTTCGGTTCACATTGGCCAAGCTGGTGTC
CAGATCGGCAATGCCTGCTGGGAACTTTACTGCCTGGAGCACGGCATCCA
GCCCGATGGCCATATGCCCTCCGATAAAACCGTGGGCGGAGGCGATGACT
CCTTCAGCACCTTCTTCAGCGAGACTGGAGCTGGTAAGCATGTGCCGCGT
GCCGTGTTCGTGGATCTGGAGCCCACTGTGGTGGATGAGGTGCGGACAGG
AACCTACCGCCAGCTGTTCCATCCGGAGCAACTGATCACCGGTAAGGAGG
ATGCGGCCAACAACTATGCCCGCGGCCACTATACCATCGGTAAGGAGATC
GTCGACGTGGTCCTGGACAGGATTCGCAAGTTGGCGGATCAGTGCACGGG
TCTGCAGGGATTCCTGGTCTTCCACTCCTTCGGCGGCGGCACTGGCTCTG
GATTTACGTCGCTGCTGATGGAGCGCCTGTCCGTGGACTATGGAAAGAAG
TCAAAGCTGGAGTTCTCCATTTACCCAGCACCACAAGTGTCCACAGCTGT
GGTCGAGCCATACAACTCGATCTTAACCACCCACACAACGCTGGAGCACT
CGGACTGTGCGTTTATGGTTGACAACGAGGCAATCTACGACATCTGCCGG
CGCAACTTGGATATCGAGCGACCCACCTACATGAATCTCAATCGCCTAAT
TGGCCAGATCGTTTCCTCCATTACGGCCTCGTTGCGCTTCGATGGCGCCC
TGAATGTGGATCTGACCGAGTTCCAGACCAATTTGGTGCCCTACCCACGC
ATTCATTTCCCACTGGCGACATACGCTCCCGTCATTTCCGTGGAGAAGCC
TACCATGAGCAACTGACCGTGGCCGAGATCACCAATGCCTGCTTCGAGCC
GGCCAACCAGATGGTCAAGTGTGATCCGCGTCGTGCAAGTACATGCCTGC
TGCATGCTCTACCGCGTGATGTGTTGCCCAAGATGGAACGCAGCAATGCC
ACATCAGAACCAGCGCTCTTATCCAGTTCGTCGACTGTGTTCCCACGGCT
TCAAGGTGCATCACTATCAGCCACCACCGTTGTTCCTGGCGGATTCTGAC
AGGTGCACGCG
UFO09232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub85E-RA | 1560 | CG9476-RA | 102..1200 | 8..1093 | 5030 | 98.1 | Plus |
| alphaTub84B-RA | 1752 | CG1913-RA | 169..1237 | 34..1089 | 2825 | 85.2 | Plus |
| alphaTub84D-RA | 1980 | CG2512-RA | 534..1603 | 36..1092 | 2680 | 84.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7087256..7088208 | 34..982 | 2660 | 86.3 | Plus |
| 3R | 32079331 | 3R | 9732277..9732804 | 538..11 | 2640 | 100 | Minus |
| 3R | 32079331 | 3R | 7531286..7532236 | 36..982 | 2545 | 85.5 | Plus |
| 3R | 32079331 | 3R | 9731701..9732150 | 982..537 | 2035 | 98.9 | Minus |
| 3L | 28110227 | 3L | 9682194..9682720 | 270..796 | 490 | 72.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:00:45 has no hits.
UFO09232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:45 Download gff for
UFO09232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub85E-RA | 111..1232 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:01 Download gff for
UFO09232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub85E-RA | 96..1217 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:55 Download gff for
UFO09232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub85E-RA | 96..1217 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 00:56:55 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 16:09:01 has no hits.
