UFO09234.5prime Sequence
1129 bp (995 high quality bases) assembled on 2011-08-17
> UFO09234.5prime
CAGTCGACATGGTGGAACCCATTTTCGAGTATCAATTTCGACTGATTTTA
ATCGGCGACAGCACCGTGGGCAAGAGCTCGCTGCTCAAATTCTTCACAGA
CGGCAAATTCGCCGAGTTATCCGATCCCACAGTTGGCGTCGACTTCTTTG
CCCGCCTCATCGAAATGAAGGACGGCACACAGATCAAGCTCCAGCTGTGG
GACACTGCTGGCCAAGAGCGCTTCCGTTCGATCACCAAGTCCTACTACCG
GAACTCGGTTGGCGTGCTGCTGGTCTACGACATATCGAATCACGCCAGCT
TCGAGCACATACCGCTGTGGATGATGGAGGCACAGCGTCACATTGAGCCC
CACCGCCCCGTTTTCGCATTGGTCGGCTGCAAACTGGACCTCATCAATGC
GGGCGGACACCGGGAGGTGACCACAGAGGAGGCACAAAAATTTGCCAAAC
AGCACGGTCTGCATTTCGTTGAGACGTCGGCCCGGTCTGGTGCCAATGTG
GAGGAGGCATTTCGCATGGTCACCCAGGAGGTGTACGCCCGCATTCGATC
CGGCGAATATAAGGCGGAGGATGGATGGGACGGCATCAAGTCTGGCTTTT
CGCGACCCAATAGTCTGGACTTTAATCTCGTCGTAGCAGAGCCGGAAAAG
TCATCATGTTGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCTGCCACTCATCGCAGTACTGTTGTAATCATAGCATTCTGCGAC
ATGGAAGCATCACAACGCATGATGACCTGATCGCCAGCGCATCAGCACTG
TCGCTGCGTATATATTTGCCCATGTGAACCGGGGCGAAGAGTGTCATATG
CCACGTTAATTCAAACTGTGACTCACAGAATGCTGAACGAAACATCCATA
CTTAGGATGCAGTTACGTACGCCACTTGC
UFO09234.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab39-RB | 1406 | CG12156-RB | 306..959 | 9..662 | 3255 | 99.8 | Plus |
| Rab39-RA | 1129 | CG12156-RA | 306..959 | 9..662 | 3255 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7735762..7736309 | 115..662 | 2725 | 99.8 | Plus |
| X | 23542271 | X | 7735228..7735335 | 9..116 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:00:08 has no hits.
UFO09234.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:43 Download gff for
UFO09234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab39-RA | 296..956 | 1..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:42 Download gff for
UFO09234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab39-RA | 299..959 | 1..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:39 Download gff for
UFO09234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab39-RA | 299..959 | 1..662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:39 Download gff for
UFO09234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7735221..7735335 | 1..116 | 96 | -> | Plus |
| X | 7735764..7736309 | 117..662 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:42 Download gff for
UFO09234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7629254..7629368 | 1..116 | 96 | -> | Plus |
| arm_X | 7629797..7630342 | 117..662 | 99 | == | Plus |
