UFO09238.5prime Sequence
1106 bp (952 high quality bases) assembled on 2011-08-17
> UFO09238.5prime
CAGTCGACATGAATATAAATCTGCCGAATTTCAATGTGAAGAACCTGGTG
AAGGAGGCGGGCAGCACAATATCACGAGTGGTGCAGCTCACGGAGGAGAA
ACTGGGCACCACGGAGCGCACCGAGTACGACTTGCACTTCCAGAATCTCG
CCGAGCGGGCTGATGTGACCAAGACATGGACGGAGAAGATAGTGCGCGAC
ACAGAGTCGGTGCTGATACCCAATCCTCAGAACCGGGTCGAAGACTTCAT
CTTCGAGAAGATTGAAAAGTCGAAGCCAAAAAGGTTGAGCAACCTAGAGC
ACCTGGCTCTGGACATGATCGAGGCTGGGGGCGATTTCGGGCAGGATTTA
CCCTATGGTCAGGCTCTGATCAAGGTCGGCCAAGCGGAACAGAAACTGGG
CCAGTGCGAGCACGACTTTATAGCCACCTCGGGCATTTGCTTTACACAGC
CGTTGCGCAAGTTCCTAGACGGCGAAATGAAGACAATTGGCAAGGAGCGA
GGCATCCTGGAGACCAAGCGCCTGGATCTGGACGCCTGCAAGAACAGGGT
GAAGAAAGCGCGCAGCATGCTGGGTCAGCAATCGGCGGAACGGGACTTGC
GGGTGGCTCAGGCCGAGTTCGACCGGCAGGCGGAGATTACCAAGCTGCTG
CTGGACGGGATCAGCACATCGCAACATCTCATTTGCGCCACTTGCACGCC
TTCATCCAGACGCAAGTGCGCTACTACAAGCAGTGCGGCGATGTCATGGA
GCAGCTGCAGCGTGAACTGGCCAACTTGGGAGCCCCACGCCATACATTCC
GCTCGACGTGAACGAGGCCAGTGCCCAGCAAGTCAACATATCGTCCGGAG
CCGCAGCCCGTGTCCTGGCAACAATCACTCTGCCAATATGGCTGCCACCG
GCCCACAAGCCTAATCAGCCCATGCACGTCAGCACGGATCAGATGCAGAG
GGCACGCGTCCTTTGCCCTACGACGCCCAGATCACACCGAGCTTAATTTG
ACGCCATGAGTGATTCTCGTGACGATTGCTTCACCAGTTAACCGAGAATA
ACTGTACCGGAAACAGGATCTATTGAAGGTCTGTGCACGCGCATTGTGAA
ATGCTC
UFO09238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-RB | 2190 | CG9834-RB | 114..1223 | 9..1106 | 4905 | 97.2 | Plus |
| EndoB-RD | 2154 | CG9834-RD | 114..880 | 9..774 | 3795 | 99.7 | Plus |
| EndoB-RC | 2190 | CG9834-RC | 114..689 | 9..584 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19309815..19310316 | 585..84 | 2510 | 100 | Minus |
| 2R | 25286936 | 2R | 19309393..19309584 | 774..584 | 895 | 99 | Minus |
| 2R | 25286936 | 2R | 19308584..19308805 | 1001..782 | 805 | 96.9 | Minus |
| 2R | 25286936 | 2R | 19310475..19310552 | 86..9 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:01:18 has no hits.
UFO09238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:47 Download gff for
UFO09238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RB | 141..1137 | 9..1001 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:15 Download gff for
UFO09238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RB | 114..1110 | 9..1001 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:09 Download gff for
UFO09238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoB-RB | 114..1110 | 9..1001 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:09 Download gff for
UFO09238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19308584..19308813 | 775..1001 | 96 | <- | Minus |
| 2R | 19309393..19309583 | 585..774 | 98 | <- | Minus |
| 2R | 19309816..19310313 | 87..584 | 100 | <- | Minus |
| 2R | 19310475..19310552 | 9..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:15 Download gff for
UFO09238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15196089..15196318 | 775..1001 | 96 | <- | Minus |
| arm_2R | 15196898..15197088 | 585..774 | 98 | <- | Minus |
| arm_2R | 15197321..15197818 | 87..584 | 100 | <- | Minus |
| arm_2R | 15197980..15198057 | 9..86 | 100 | | Minus |
