UFO09239.5prime Sequence
1122 bp (997 high quality bases) assembled on 2011-08-17
> UFO09239.5prime
CAGTCGACATGCTGCCACTTTCACTTTTAAAAACAGCACAGAGCCATCCC
ATGTTGGTGGAGCTGAAAAATGGTGAAACATACAATGGTCACCTGGTTAG
TTGCGACTCGTGGATGAATATTAATCTGCGCGATGTTATTTGCACCTCAA
AGGATGGCGATCGGTTTTGGCGCATGCCCGAATGTTATATCCGCGGGAGC
ACCATCAAATATCTGCGAATCCCCGACGAAGTAATCGACATGGTCAAGGA
GGACGCGCAGGCCAAGTCAAGGAATCGCACAGAGATGAACAAAAACCGCG
GCGGCAACTCGTCGCAAAATCAGCGCGGCGGACGTCCTGGTGGCGGCAAC
CGCAACAATGTCGGCAATCGTCCCGGCCAGGGATACGGAGGTGCTGCTAA
CAACGCGATGCGCCTGGGTGGCGCTGCTGGCCAAGGGAACCGTCTGCCCC
ACGCCGCCAAAAATAGGAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAATCAAAAC
TGGTGAACCTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATA
ATCCCTTAAGGAATAGCCAGTTTCACCGTTACACGCCACATCTTGCGAAA
ATATGTGTAAGAACTGCGAAATCGTCTTGTATTCACTTCAGAGCGATGGA
ACGTTCAGTTGCCTCATGAAACCGGTTAACAGGGTGGAACACTACTCAAT
ACCACAGCTCACGGTCTTTCAT
UFO09239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LSm-4-RB | 1578 | CG33677-RB | 1075..1536 | 9..470 | 2310 | 100 | Plus |
| CG17768-RB | 530 | CG17768-RB | 27..488 | 9..470 | 2310 | 100 | Plus |
| CG17768-RA | 1578 | CG17768-RA | 1075..1536 | 9..470 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10403239..10403558 | 470..151 | 1600 | 100 | Minus |
| 2L | 23513712 | 2L | 10403729..10403829 | 153..53 | 505 | 100 | Minus |
| 2L | 23513712 | 2L | 10403891..10403933 | 53..11 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:01:29 has no hits.
UFO09239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:48 Download gff for
UFO09239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17768-RA | 1040..1513 | 1..478 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:20 Download gff for
UFO09239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17768-RA | 1068..1541 | 1..478 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:12 Download gff for
UFO09239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17768-RA | 1068..1541 | 1..478 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:12 Download gff for
UFO09239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10403239..10403556 | 153..470 | 100 | <- | Minus |
| 2L | 10403730..10403828 | 54..152 | 100 | <- | Minus |
| 2L | 10403891..10403933 | 11..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:20 Download gff for
UFO09239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10403239..10403556 | 153..470 | 100 | <- | Minus |
| arm_2L | 10403730..10403828 | 54..152 | 100 | <- | Minus |
| arm_2L | 10403891..10403933 | 11..53 | 100 | | Minus |
