UFO09241.5prime Sequence
1090 bp (948 high quality bases) assembled on 2011-08-17
> UFO09241.5prime
CAGTCGACATGTCGCTCTTGCAAAAACTAAGCAGATCTGGTGTACCGATG
GCTTCATTAACCTGTCGTTCCCGAATGCCAATGGTCATTCGACTTATCAG
CGGTAACACAGAAAAACCGGCGGAGGAATCTACTCCCGCAGTGAATACGG
AAACGGCGGAGATTGGCAGCAGCAAGGGAGGATTCGCCCGTGCCTTCGAC
AAGTACACGGCACCAGCCACGCCTCCACAGCTGCCGGAAGACAACCAGAC
CTTCGCCTCCCTGCTGCGCAACTCCAAATTAATTGATCTGGACAACGCCG
AGGGCAAGGTGGTCAGTGGCAAGATCTTTCATGTGGTGGGCGATGATCTC
TACATAGACTTTGGTTGGAAGTTTCACTGCGTCTGCAGTCGTCCAACACG
CAATGCCAGCGACTATGTGCGAGGAGCCCGTGTTCGACTGCGCATCAAGG
ACTTGGAGTTGTCCACCAAGTTTCTGGGTTCGTCCAAGGATATTACCATT
CTAGAGGCAGATTGCCATTTGCTGGGTCTCCTGTCCACGCCCACCCGCCA
GTCGACGGCCAAAACAACGCCGAAAATCGAAGATATCCTAGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCACCGAGCGTTCT
GAACAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCACAGGAGTC
CAAGCGAGCTCGATATCAATTACGGCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGCAGCCATCACAAACGGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCTGCGTATAA
TTTGCCCATGGTGAAACGGGGCGAAAAGTGTCCTATTTGCCACGTTAATC
AACTGTTGAACTCACCCATGGATGGCTGGAAACGAAACACTATTTCTCAA
TAAGCCTTAGGAAATAGCCAGTTCCGTACACGCCCCATCC
UFO09241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS28-RA | 691 | CG5497-RA | 75..657 | 8..590 | 2915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18614661..18614944 | 291..8 | 1405 | 99.6 | Minus |
| 2R | 25286936 | 2R | 18614244..18614427 | 590..407 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 18614482..18614603 | 409..288 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:01:39 has no hits.
UFO09241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:49 Download gff for
UFO09241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS28-RA | 73..664 | 8..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:24 Download gff for
UFO09241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS28-RA | 75..666 | 8..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:14 Download gff for
UFO09241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS28-RA | 75..666 | 8..599 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:14 Download gff for
UFO09241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18614234..18614424 | 410..599 | 97 | <- | Minus |
| 2R | 18614482..18614603 | 288..409 | 100 | <- | Minus |
| 2R | 18614665..18614944 | 8..287 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:24 Download gff for
UFO09241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14501739..14501929 | 410..599 | 97 | <- | Minus |
| arm_2R | 14501987..14502108 | 288..409 | 100 | <- | Minus |
| arm_2R | 14502170..14502449 | 8..287 | 100 | | Minus |
