UFO09242.5prime Sequence
1144 bp (1012 high quality bases) assembled on 2011-08-17
> UFO09242.5prime
CAGTCGACATGGCCGATGGAGAATACGACAAGGAACAATTGAGAATCCTT
AGGAACGCCTTCAAGGCTTTCGACCACGACGGTGCAGGATCGATCGAACA
TGCTGATGTATCTAGCATTCTTGAAATTTTGGGTCAGAAATTAGAACCAC
CTGCGGTAAAGGCCCTTATTAAAGAGGTCGATAAAGGAACAACTGGTAAA
TTGGATTTTAGCCAGTTCTGCAAACTGGCAGCTCGCTTTATTGAAGTTGA
GGAAGATGTGGGAGCTCTTCAAAATGAGTTAAAAGAGGCCTTCCGTGTAT
ATGATAAAGAGGGGAAAGGATACCTGACAGTTGCAACACTAAGAGGCATT
CTTCACGAATTGGACGATAAGCTTTCTAACCAAGACTTAGATATGATTAT
AGAAGAAATTGATGCGGATGGATCCGGTACGGTTGATTTTGACGAATTCA
TGCAAGTTATGACAGGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGA
AAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTG
GTGAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAAC
CCTTTAGGAAATAGCCAGGTTTCACCGTACACGCCACATCTTGCGATATA
TGGTGTAGAACTGCGAAATCGTCTGGTATTCACTCAGAGCGATGAAAACG
TTTCAGTTTGCCTCATGAAACCGGTGTTAACAAGGGTGAACACTATTCCA
ATACCCAGCTACGGTCCTTCATGCCAATCGAATCGATGACTTCT
UFO09242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC4-RB | 746 | CG12408-RB | 78..536 | 9..467 | 2295 | 100 | Plus |
| TpnC4-RA | 849 | CG12408-RA | 181..639 | 9..467 | 2295 | 100 | Plus |
| TpnC41C-RB | 1880 | CG2981-RB | 602..677 | 393..468 | 200 | 84.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5506313..5506711 | 444..46 | 1995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:01:45 has no hits.
UFO09242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:49 Download gff for
UFO09242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC4-RA | 181..639 | 9..467 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:26 Download gff for
UFO09242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC4-RA | 181..639 | 9..467 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:15 Download gff for
UFO09242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC4-RA | 181..639 | 9..467 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:15 Download gff for
UFO09242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5506236..5506258 | 445..467 | 100 | <- | Minus |
| 2R | 5506313..5506711 | 46..444 | 100 | <- | Minus |
| 2R | 5506761..5506797 | 8..45 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:26 Download gff for
UFO09242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1393741..1393763 | 445..467 | 100 | <- | Minus |
| arm_2R | 1393818..1394216 | 46..444 | 100 | <- | Minus |
| arm_2R | 1394266..1394302 | 8..45 | 97 | | Minus |
