UFO09245.5prime Sequence
769 bp (488 high quality bases) assembled on 2011-08-17
> UFO09245.5prime
CAGTCGACATGGCTCCCCATCAAAAGGGTAAACAAGGCACGAAGGGCGCC
AAGCAAATCGTGGAGGAAAACAAGACTACACTGACTTTCTACCGGAACAT
GGCCATTGGATGTGCTGCACCCGCTCTGCTCCTCAGTTTCCTGGTCTTCA
AAGTCACCAAAACCTCAGTGTTTATGCACATTCTTTCGTTGCTGATCCTG
GGGAGCTCCTACCAGTTTATGGCGTTCATGTCGCAGGCCAAATACTCTGA
GAGCGGTGCTCTTTTGGACTCCGGCAACGACTTAAATATGGAAGGCGGCA
TCGCGGAAAACGTTAAGGATTTGATCATCCTTACTTCCGGCACCCTGCTG
CTGGCCCTCATCTCAAACTACTTCTGGTTGGTGCTGCTTTTGGCGCCCAT
ACGAGCTGGATGGATGCTCTGGGGCTCCGTCATCCAGCCGTGGCTGTCGC
AACGCAACGCCCAGGACAATAATCCCCAGGTGGACGAGAAAAGCAAAAAA
AGATGGATCGCAGAATGCGTCGCATGATAACAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAAGAGATCCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAAACGCCCGGCTGCAACCGAGCGTTCTGAACAATC
CCAGATGGAGTCTGAGGTCTTTACTGGATCTACCAACAGGAGTCCAAGCA
AGCTCGATATCAAATTACG
UFO09245.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8320-RA | 981 | CG8320-RA | 161..681 | 8..527 | 2535 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15993187..15993407 | 308..527 | 1040 | 99.1 | Plus |
| 2R | 25286936 | 2R | 15992778..15992933 | 15..170 | 750 | 98.7 | Plus |
| 2R | 25286936 | 2R | 15992992..15993129 | 170..307 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:02:06 has no hits.
UFO09245.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:51 Download gff for
UFO09245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8320-RA | 150..688 | 1..535 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:37 Download gff for
UFO09245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8320-RA | 152..690 | 1..535 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:20 Download gff for
UFO09245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8320-RA | 152..690 | 1..535 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:20 Download gff for
UFO09245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15992775..15992933 | 8..170 | 96 | -> | Plus |
| 2R | 15992993..15993129 | 171..307 | 100 | -> | Plus |
| 2R | 15993187..15993416 | 308..535 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:37 Download gff for
UFO09245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11880280..11880438 | 8..170 | 96 | -> | Plus |
| arm_2R | 11880498..11880634 | 171..307 | 100 | -> | Plus |
| arm_2R | 11880692..11880921 | 308..535 | 97 | == | Plus |
