UFO09248.5prime Sequence
1124 bp (981 high quality bases) assembled on 2011-08-17
> UFO09248.5prime
CAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACAAGGAGGAG
CTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAGGAGGCGGG
CACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGAGAAGGGCG
TGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGGAGACCAAG
TACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTAGACAAGGG
CAAGGTCACGCTGCACCGCGATGCCAGCATACCAGGCATGGTGCGCACCG
AGGTGCGCTGCTCCCGATGCTCCGCCCATATGGGCCACGTCTTCGATGAT
GGACCGCCGCCCAAGCATCGACGCTTCTGCATCAATTCCGCGTCCATCGA
TTTCGTGAAGAGTGCGACGCCATCGAAGGCGGATCCATCGACGGCCTCGT
CCAAGAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT
CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGG
CGAAGAAGTTTCCATATTGGCCACGTTTAAATCAAACTGGTGAAACTCAC
CAAGGGATTGGCTGAGACGAAAAACATATCTCATAACCCTTTAGGGAATA
GGCCAGGTTTCACGTAACACGCCACATCTTGCGAAAATATGTGTAAGAAA
CTGCCGAAATCGTCTGGTATTCACTCCAGAAGCGATGAAAACGGTTTCAG
TTTGCTCCATGGAAAACGGTGTTAACAAAGGGTGAACCCTTCCCATATCA
CCAGCTCACCGTCTTTCAATGCCA
UFO09248.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RJ | 2392 | CG6584-RJ | 376..825 | 9..458 | 2250 | 100 | Plus |
| SelR-RH | 2277 | CG6584-RH | 261..710 | 9..458 | 2250 | 100 | Plus |
| SelR-RG | 2298 | CG6584-RG | 261..731 | 9..458 | 2030 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10865454..10865628 | 458..284 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 10866528..10866698 | 286..116 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 10866807..10866920 | 122..9 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:01:09 has no hits.
UFO09248.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:47 Download gff for
UFO09248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RH | 268..728 | 1..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:10 Download gff for
UFO09248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RH | 253..713 | 1..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:05 Download gff for
UFO09248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RH | 253..713 | 1..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:05 Download gff for
UFO09248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10865454..10865626 | 286..458 | 100 | <- | Minus |
| 3R | 10866529..10866693 | 121..285 | 100 | <- | Minus |
| 3R | 10866809..10866928 | 1..120 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:10 Download gff for
UFO09248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6692251..6692415 | 121..285 | 100 | <- | Minus |
| arm_3R | 6692531..6692650 | 1..120 | 98 | | Minus |
| arm_3R | 6691176..6691348 | 286..458 | 100 | <- | Minus |
