UFO09250.5prime Sequence
1125 bp (1028 high quality bases) assembled on 2011-08-17
> UFO09250.5prime
CAGTCGACATGAGTAGTCAACCTGCCAGCCAGCCCGATAGCATCGATTTA
GCCTATGATATGTGGGCGGGCCAATTCGAATTCGTAGGACCCACAAATCA
GCAGAGCAACAAAAACAGCAACAACAACAACAACAATAGCAATTTGAACA
ACAACAAGTGCAGAATCGGAGCGCAACAAAACCGAAAACTATCTACGGAT
AGTCTGGAGGATCTGAATTTGAGTTTTAACACAAGTGCCTCGCAAAATCC
GCTAAGCAACGCCTACAGTTTGGGAGTCACTGGCGGTGCTGGAAGTGACT
ACTGTGGCTTTGGAAAACACCCGCCAATATTGATCGATCAGGAGACGTTT
CTCAGCCTCAATCCAGCGGACTTTGAGGACATTGTGCCATCCAATTCGGA
GCCCAATTCGCTGGTTTTCATCGAAAACAAGCTGGAGACTAACAACAATA
GCCTCGAATCGAACAACAATCATATAAACAATAATAATAACAATAAAATC
TACAATTTGGAGAACCTGACAAGTAAATTCAATAATAAAACGAATAATAC
GAATACAAACGGTTTCAAATTGGAGAACCTAAAGAATTTCAAGAACAAAC
TACTCTGTGATTTCGAGGATACCAATAGCGGGGGAGGAGGAGGTGGTGGC
AGTGGCGGATCAGGACCTGTTGGCATGATGAACGGCGCCCTCAGCGCAGA
GATTTGCGATAATCTCAATGAGCAACTGGAACTGCTGCAGCGCAAGGTGG
ACGATCTGTCAGATACACAGAATATAGCTGAGGATCGGACAACCCGCACC
AAGACCGAATATGCAGTCCTTCAGCGCGTTATCACATGCTCGAAGAGCAG
TACCGAGAGTCGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAA
GCGGCACCGCGAGATTTTGGCCCGCGTGGAGCGTGAAGCCTCGCTGCAGA
ACGAGAACTGCCAGATGAGATCCGTGCCACCGAGATCGAGGCACGGCACT
GCGGAAAAGCCGCCCGACTGGCGTGTTCCTGTGTGACAGCAGGCCAATGA
CCTCCATCGCACCGAGGAACAGTGAGCTTGCGCCGCGAACAAATCCGGCG
TTCCTGCACAGGACCGAGGACCAGT
UFO09250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RK | 3138 | CG33991-RK | 317..1426 | 8..1113 | 5205 | 98.6 | Plus |
| nuf-RJ | 3272 | CG33991-RJ | 451..1560 | 8..1113 | 5205 | 98.6 | Plus |
| nuf-RF | 3099 | CG33991-RF | 317..1426 | 8..1113 | 5205 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14225686..14226403 | 8..725 | 3590 | 100 | Plus |
| 3L | 28110227 | 3L | 14230654..14230872 | 858..1073 | 775 | 96.4 | Plus |
| 3L | 28110227 | 3L | 14230176..14230310 | 726..859 | 625 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:02:42 has no hits.
UFO09250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:53 Download gff for
UFO09250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RF | 307..1407 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:56 Download gff for
UFO09250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RF | 309..1409 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:35 Download gff for
UFO09250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RF | 309..1409 | 1..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:35 Download gff for
UFO09250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14225678..14226403 | 1..725 | 99 | -> | Plus |
| 3L | 14230176..14230310 | 726..859 | 99 | -> | Plus |
| 3L | 14230656..14230895 | 860..1095 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:56 Download gff for
UFO09250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14218778..14219503 | 1..725 | 99 | -> | Plus |
| arm_3L | 14223276..14223410 | 726..859 | 99 | -> | Plus |
| arm_3L | 14223756..14223995 | 860..1095 | 95 | | Plus |
