UFO09252.5prime Sequence
1118 bp (996 high quality bases) assembled on 2011-08-17
> UFO09252.5prime
CAGTCGACATGACAACACGCACGGTGCAGAGAAATCTGTGGGCCTCCGCT
GCGGTGGTCCTAGTTCTGCTCCTGCTCTGGACGGACACCACTGGAGGCTA
TTTTGCAGCCATCGATGAGACGGAGACTAGCAAAAACTGCTTCTGCGAGT
TGGAGGGATCTATAAACGACTGCAGCTGCGATGTGGACACGGTGGATCAC
TTTAACAACATGAAAATCTATCCGCGATTGCAGAGTCTGCTGGTGAAGAA
CTTCTTCCGCTTCTACAAGGTGAACCTGCGGCAGGAGTGCCCCTTCTGGC
CGGATGACAGTCGCTGTGCGATGCGCTTCTGCCAGGTGGAGAACTGCGAG
GAGCAAGCGATTCCCCAGGGCATCAAGGACAAGGGAGAGCACAAGGAGAA
GGCCGCGTTTAAATACACGCGCGAGGCGCAAGTTGGGGGCTCAGCGTGCT
CGGATGGAGAGGATTTCGACAGCTCTCTGGGTTTCCTGGACACGAGCATA
AGTGATCAGGCGCATCGGGAATTCGAACTGTGGGCGAAGCATGATGAGGC
GGAAGAGGACTTTTGCATCGTGGACGATCATGAGGAGGGATCCCAGTATG
TGGATCTGCTCCTAAATCCTGAGCGGTACACCGGCTATAAGGGCGAATCG
GCACATCGCATCTGGAAGAGCATCTATCTGGAGAACTGCTTCGGTGGCAA
CAACGAGACGGCTAACAAGTTCTCTAACTACGTGCCTCATTTGGATTTGC
GAAATGTGTGCTTGGAGCAGCGTGCCTTTTATCGCATTATTTCTGGCCTG
CACTCTAGTATCAACATTCATCTGTGCTCCAAATACCTGCTGTCAGAGTC
AAAGGACTTCTTAGATCCGCAGGCATCTGGGGTCCCAACGTAAAGGAGTT
TAAACGACGCTTTAGTCCAGAACCACAGCGGGTGAAGGTCCGCACTGGCT
GCGAAACCTCTACTTCATCTATCTGAAAAGAACTGCGCCGCTTGGCTAGC
TGCTCCTTATCTGGCGGCGAGAAGATACTACACGGGCATCGCAAAGGAGG
ATGGATGGAGGTCACTAGCCATCAATTGAATATGTTTGAAGTTTCATAGA
AATTCATCCCCACTCCGC
UFO09252.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ero1L-RB | 2100 | CG1333-RB | 249..1341 | 9..1102 | 5015 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4172225..4172867 | 414..1053 | 2805 | 97.8 | Plus |
| 3L | 28110227 | 3L | 4171212..4171477 | 148..413 | 1330 | 100 | Plus |
| 3L | 28110227 | 3L | 4170652..4170796 | 9..153 | 710 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:03:01 has no hits.
UFO09252.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:54 Download gff for
UFO09252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ero1L-RB | 383..1479 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:03 Download gff for
UFO09252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ero1L-RB | 245..1341 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:41 Download gff for
UFO09252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ero1L-RB | 245..1341 | 1..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:41 Download gff for
UFO09252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4170648..4170792 | 1..149 | 97 | -> | Plus |
| 3L | 4171214..4171477 | 150..413 | 100 | -> | Plus |
| 3L | 4172225..4172910 | 414..1100 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:03 Download gff for
UFO09252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4170648..4170792 | 1..149 | 97 | -> | Plus |
| arm_3L | 4171214..4171477 | 150..413 | 100 | -> | Plus |
| arm_3L | 4172225..4172910 | 414..1100 | 96 | | Plus |
