UFO09255.5prime Sequence
1122 bp (1017 high quality bases) assembled on 2011-08-17
> UFO09255.5prime
CAGTCGACATGGCCACCAACCTGCAAAAGGCCACCCTTGAGGAAATTCGA
CATGCGGCCGCGCGTATTTGCCGAGACTATCTAACTGGGCCCTGGAAAGT
GGTTACTCCGGAGAGTTTGGTAGTGAAGCGCATAAGTGGCGGGCTGTCAA
ATTTCTTGTATTACGTAAGCCTTCCCGATTTAAATGACTACGATGAGCTG
GACGAACAGAAACAGCAGCAGGAAGACATCATAGGGGCCACCGCAACTGT
GACCAATAGAAGCGGAGTTTTCATACACGACGATGAGTCGGCTGCCAAGG
CGGTGGGCGTAACATTGATGGCGAGGGAATTAATAAATAACGATGACGTC
GCCGACGCAGCTCCTGGCGCCACACAAGCACACAAACGTCAGCGATGCGA
TAGTAATAGTCGCGAATGCAGTTCTTCGAAACGATTGCACGCCCCCAAGC
AGCAACCCCGTGAGGTCCTTCTGCGAATATATGGTCAGACCCATGGTGAT
CACGCCCTGGAGAGCATGATTACCGAGTCCGTGGTTTTCGCCCTTCTCAG
TGAACGGAACTATGGGCCCAAACTGCACGGAATCTTTCCGGGCGGACGTA
TTGAACAATATATTCCGGCACGCGCTTTGACCACAGCAGAATTGGGAGAG
CAACGAATATTAAAGAGAGTGGCTGAGAAAATGGGTGAGATCCACAGTCT
TAATATACCCATGTCTAACGAGCCCGATTGGATTTGGAATTGTATGCAGC
GTTGGGTTTCCGGTTTAGAGAGCATTGTTAACGGCAGTGTCCAAACGAAT
CAAAAATCTTCGGTACTGAAGAAGCAAATGGAATTGATGCGGACCTTTGA
CTACGTTCAAGAGATGGCCTGATTAGTCGATTATCGATGACGAGATTATC
CAGTTGTGTTCTGTCATAATGATCTGCAGATGTATATTCTGATGCGACAA
CCGTCAGCTGTCAAACGACGACCCCCCGGGAGTCAATCAGTAGCTGAGAT
CACTTCGACGAACTTTGGGTGAATAGCCTTGATGAAATAGCAATTATCGG
ATACGGAACCCACATCAGGTAGCGTGTCCGCTCCCATGCCGGAATTGAAC
CTACGATGACTCGACCTGCATT
UFO09255.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2201-RG | 2463 | CG2201-RG | 695..1821 | 9..1112 | 4900 | 97 | Plus |
| CG2201-RA | 2010 | CG2201-RA | 242..1368 | 9..1112 | 4900 | 97 | Plus |
| CG2201-RF | 2561 | CG2201-RF | 280..1385 | 30..1112 | 4795 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21617492..21617823 | 466..135 | 1660 | 100 | Minus |
| 2L | 23513712 | 2L | 21616187..21616574 | 994..617 | 1440 | 95.6 | Minus |
| 2L | 23513712 | 2L | 21617279..21617434 | 618..463 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 21618004..21618112 | 136..28 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:03:15 has no hits.
UFO09255.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:55 Download gff for
UFO09255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RA | 207..1301 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:09 Download gff for
UFO09255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RA | 235..1329 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:47 Download gff for
UFO09255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RA | 235..1329 | 1..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:47 Download gff for
UFO09255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21616182..21616573 | 618..998 | 96 | <- | Minus |
| 2L | 21617280..21617432 | 465..617 | 100 | <- | Minus |
| 2L | 21617494..21617821 | 137..464 | 100 | <- | Minus |
| 2L | 21618004..21618110 | 30..136 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:09 Download gff for
UFO09255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21616182..21616573 | 618..998 | 96 | <- | Minus |
| arm_2L | 21617280..21617432 | 465..617 | 100 | <- | Minus |
| arm_2L | 21617494..21617821 | 137..464 | 100 | <- | Minus |
| arm_2L | 21618004..21618110 | 30..136 | 100 | <- | Minus |
