UFO09257.5prime Sequence
1120 bp (991 high quality bases) assembled on 2011-08-17
> UFO09257.5prime
CAGTCGACATGTCGTCCTCTTTCTTCCTCAAGCCAGGCGCCAAGGGCACC
AAGAAGCGCAAGAATCCCGCAGCAACAACAAAAGGAAAACCGCTTAAGAA
AGGCGGAAAACCGGGTAAATCAACGCCCGCGGCTGGTGGACCAGTGCCAA
AGAAGCAGCGCCGTCCCAAGGAGGAGGACGAGGAGATAGCTAGCGACGAT
GAGGAGTACAACAGCGATCTGGGCGGCGATGACAACACCTTGGCATTTTC
ATCCGACGAGGGCGAGGAGGAAACGCCGCAGGACAAGCGCCTGCGTCTGG
CCAAACAGTATCTGTCGGAGATCGAGAAGCAAGAGGCGGAACGCGCCGAG
GATCGGGAGCTGGCCCAAAGCGTGGAGCAGCGCTTGCAAACGGAATACTT
GGATAGCGTGGGCAAACTGCGCCGGAACATTGCTGGCAGCCTGAAAGCCT
GCGAATCGAGCCGCATCCTCAAGCACAAACTCCACCACACGCCTATCTGT
GCCCTTGCACTCAGTCCGGATGGTAAATTCCTCTACACGGGAGCCAAATC
GCAATTCCTACTTAAGTGGTGCACGGAAACGGGGAAGGTGCTGGAGAAAT
CGGACGTGCTGTCGCATCGCGAGGAACCAGAAACGGGCAAGAAAAGGCGA
TCGCATGTCATCAGCATATGCCTGTCCTCGGACATGAAGTATCTGGCCTT
GGCCGAAGGTGGTCCACACATTCAAATTTGGTGTCCCCAGACGATGAAGC
ACATTAAGACTCTTAAAGGCCACCGGGATAGTGTGGCAGTCTGGTCTTTC
GCAAAGGCACACATGACTTGTACTCGGCAGCCAAGATCGATCGGTGAAAA
TCTGGTCCCTGGATGAGATGGCCTATGTGGAGAGTTTATTCGGTCACCAA
CGGCAGTAACTAGCATAGATGCACTGAGTCGAGAGCGCGCCATTACCGCT
GGCGGTTCGGATTGCTCCTTGCGCATTTGAGATCCAAGAGGATCCGCAGC
TGATCTACATGACCAAAGATAGCATTGAGTGGCTAGTACATCACGATGGC
CATTGTGTCTGGTGGCATGAATGGACATCGGTTATGACGCTTTGAAAGAG
CAATTGTACACGCACTGCCA
UFO09257.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U3-55K-RA | 1690 | CG33505-RA | 120..1226 | 9..1097 | 4985 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14859709..14860537 | 887..61 | 4045 | 99.8 | Minus |
| 2R | 25286936 | 2R | 14859523..14859647 | 1009..888 | 450 | 94.4 | Minus |
| 2R | 25286936 | 2R | 14860586..14860639 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:03:25 has no hits.
UFO09257.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:56 Download gff for
UFO09257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U3-55K-RA | 98..1200 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:14 Download gff for
UFO09257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U3-55K-RA | 111..1213 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:50 Download gff for
UFO09257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U3-55K-RA | 111..1213 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:50 Download gff for
UFO09257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14859709..14860535 | 63..887 | 99 | <- | Minus |
| 2R | 14860586..14860643 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:14 Download gff for
UFO09257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10747214..10748040 | 63..887 | 99 | <- | Minus |
| arm_2R | 10748091..10748148 | 1..62 | 93 | | Minus |
