UFO09258.5prime Sequence
1116 bp (992 high quality bases) assembled on 2011-08-17
> UFO09258.5prime
CAGTCGACATGCAGCTGATTCTCGTGGCGACCTTGCTGTGCCTGATAATC
GGCAGCTGCAGTGCATCCATAAGTGGGCCGTTCATCTTCTGGGGTCACTC
CAGGGTATCCAGTCAGCAAACCCAGGCCTTGGTGGAATCGAGCAGCAGGG
AGCTACCGCTGACGCAACTTTTCACAGAGGCCAAGGCAATTGTGGTCTTC
GTACGCAACACTACCAACCGACTGGAGGGCACCAGGTATCCCAAGTTCCA
GAATCTCGTTAAGAGCGGAGCCTGGACCTATCTGCCACAGAGGAGTCTGG
CGGCTGAACCCTTCGGCTTGAATGCCAACATTGAAGTGGTGAGTCTCTCG
GGACACGGAGAAGAGGATGACTCTGAGATTCTGTTGGCCTACAACGAAGC
CGTGAATACCTACGGTCGCGGTGAAGTGCTGGGCATCTTGGGCAGCCGTG
AGGAGGAGGCCCACTTCCTGGCCAAGAGGGAGGCTGCTCCAGGGGGTGAG
GAGGAGGAGAAAGCAAAGGCTGCTGAAGGTTCCGAGGAGACTGAGGCCAG
TTTCATCTACGTGGCCGAGGGCAACAAAGCGGTGCTTAGTCTCAACGGAC
CCCTGGAGCTCCGGGTGACCAATGACACTCTGAAGCTGGAGGAGCACATC
AAGCAGATTACCTTCGATGATCAGCGGGCCAAGGGATACGGTCGATTGAG
CATCACTTTCATGCATTCAGGGGAAAAGTGCACGCTGCGTTTTAAATTCT
CCCTCATTCGGGGATCCTGGACGTTGCGCAATGTGGAGGTGGAGTACCGA
GAGCTGAAGAGTGTCCTGTAGCACGTGGTGATGAGTACACACTGCCCTCC
GCACCGCTGGGATTCTCGTACCGCTGCTCAGCGGAAGCGTTAACTCCTGA
ATCCCGCCGGAATGAGACAATCAGAGTCTCTTCCTCAGTGATTTCCAGGT
GCAGCGGTGCTCAACGGAACGACCGGAATATGGTGAGGTGTACGACTGCA
TATGATTCGTGTTCGGCACCTATCCTGGCGGGACTGTTCGTCGTGAACCT
TGCTCTTTGCATCTGGGACTCGGCAATTCCCGCATGTCTACATGTGCACC
GCCCACCCTATCTAGA
UFO09258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31030-RB | 1616 | CG31030-RB | 59..1130 | 9..1075 | 4965 | 98.1 | Plus |
| CG31030-RA | 1671 | CG31030-RA | 59..1130 | 9..1075 | 4965 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30165233..30165977 | 1075..336 | 3105 | 97.2 | Minus |
| 3R | 32079331 | 3R | 30166032..30166361 | 338..9 | 1635 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:02:15 has no hits.
UFO09258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:51 Download gff for
UFO09258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31030-RB | 66..1154 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:42 Download gff for
UFO09258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31030-RA | 55..1143 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:23 Download gff for
UFO09258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31030-RA | 55..1143 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:23 Download gff for
UFO09258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30165220..30165977 | 336..1089 | 96 | <- | Minus |
| 3R | 30166035..30166365 | 1..335 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:42 Download gff for
UFO09258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25990942..25991699 | 336..1089 | 96 | <- | Minus |
| arm_3R | 25991757..25992087 | 1..335 | 98 | | Minus |
