UFO09260.5prime Sequence
1150 bp (1020 high quality bases) assembled on 2011-08-17
> UFO09260.5prime
CAGTCGACATGGGTAAGGGTAACAATATGATTCCGAATCAGCACTACCAC
AAGTGGTGGCAGCGGCATGTGAAGACCTGGTTCAACCAGCCGGCCCGCAA
GGTCCGCAGGCATGCGAACCGCGTCAAGAAGGCTAAGGCCGTCTTCCCCC
GCCCAGCCAGCGGTGCCCTGCGCCCTGTGGTTCGCTGCCCCACCATCCGC
TACCACACCAAGCTGCGTGCCGGCCGTGGTTTCACCCTGGAGGAGCTGAA
GGGTGCCGGCATTGGCGCCAACTTCGCCAAGACCATCGGCATTGCCGTCG
ACAGGAGGCGCAAGAACAAATCCCTGGAGTCCCGCCAGCGTAACATCCAG
CGCCTCAAGGAGTACCGCAGCAAGTTGATCCTGTTCCCCATCAACGAGAA
GAAGATCCGCGCCGGCGAGTCCTCTCTGGAGGAGTGCAAGCTGGCTACCC
AGCTTAAGGGACCCGTCCTGCCCATCAAAAATGAGCAGCCCGCCGTGGTC
GAGTTCCGTGAGGTGACCAAGGATGAGAAGAAGTTCAAGGCCTTCGCCAC
GCTGCGCAAGGCTCGCACTGATGCCCGTTTGGTCGGAATCCGCGCCAAGC
GCGCCAAGGAGGCCGCTGAGAGCGAGGACGCCGCCAAGGGAGACCCCAAG
AAGGCCAAGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCGGACATGGAAGCCATCACAACGGCATGATGACCCTGAATCGCCAGCG
GCATCAGCACTTGTCGCCTTGCGTATATAATTTGCCATTGGTGAAACGGG
GCGAAGAAGTTGTCCATATTTGCCACGTATCAAACTGTGAACTCAGCCAG
AATGCCTGAACGAACAACAATTTCTATATACTTTAGGAATAGGTCAGGTT
UFO09260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL13-RC | 1186 | CG4651-RC | 306..959 | 9..662 | 3270 | 100 | Plus |
| RpL13-RB | 774 | CG4651-RB | 48..701 | 9..662 | 3270 | 100 | Plus |
| RpL13-RA | 791 | CG4651-RA | 65..718 | 9..662 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9967937..9968248 | 250..561 | 1560 | 100 | Plus |
| 2L | 23513712 | 2L | 9967635..9967878 | 9..252 | 1220 | 100 | Plus |
| 2L | 23513712 | 2L | 9968315..9968418 | 559..662 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:02:24 has no hits.
UFO09260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:52 Download gff for
UFO09260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL13-RB | 40..704 | 1..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:46 Download gff for
UFO09260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL13-RA | 57..721 | 1..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:27 Download gff for
UFO09260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL13-RA | 57..721 | 1..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:27 Download gff for
UFO09260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9968317..9968421 | 561..666 | 98 | == | Plus |
| 2L | 9967627..9967877 | 1..251 | 98 | -> | Plus |
| 2L | 9967939..9968247 | 252..560 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:46 Download gff for
UFO09260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9968317..9968421 | 561..666 | 98 | == | Plus |
| arm_2L | 9967627..9967877 | 1..251 | 98 | -> | Plus |
| arm_2L | 9967939..9968247 | 252..560 | 100 | -> | Plus |
