UFO09261.5prime Sequence
1128 bp (942 high quality bases) assembled on 2011-08-17
> UFO09261.5prime
CAGTCGACATGATACGTTTGGGGAACCAAATGTGCCGGCAAGTGGCCTTT
AATATACAGACTGTATTCCGAAACCCGGGCACCGCGAACAATCCGAGATT
AATCACCAGAAAGATGACACAACAGCGACCGCCGGTGAATTGGACAACCA
GTATTCCCAATCAGGCGGCGAAGGACAAGGAGAAGATAGCTCCTTTGGGA
TGGTTCCTCCTGCTCATACCGGCCACCACTTTTGGCTTGGGCTGCTGGCA
AGTGAAGCGCAAGATTTGGAAGGAGCAGTTGATCAAGGATCTCAACAAGC
AGCTGAGCACGGCGCCTGTGGCTCTACCAGACGATCTCACTGACTTGGCC
CAAATGGAGTACCGCCTGGTCAAGATCCGTGGACGTTTCCTTCACGACAA
GGAGATGCGCCTGGGTCCGAGATCGCTGATACGGCCCGATGGCGTGGAAA
CCCAAGGAGGACTCTTCTCGCAGCGCGACTCGGGCAATGGCTATCTAATA
GTAACCCCTTTTCAGCTGGCAGATAGAGACGACATAGTGCTCGTCAATCG
GGGCTGGGTGTCCCGCAAGCAAAGTGGAGCCGGAAACCAGGCCGCTGGGC
CAACAACAGGCGGAAGTGGAGCTCACCGCCGTCGTGCGCAAAGGAGAGGC
GCGTCCGCAGTTCACACCCGACCACAAGGGCAATGTCTATCTCTATCGCG
ACTTGGCGCGCATGTGCGCCGCCACAGGAGCAGCTCCTGTGTTCCTGGAC
GCCGTCTACGATCCGCAAACGGCTGCACATGCTCCAATCGGTGGACAGAC
ACGCGTTACCCTGCGCAACGATCATCTGTCGTACCTGGTGACATGGTTCA
GTCTATCGGCGGCCACCTCCTTTTTGTGTACCGCCAATAATCAAGAGGAT
ACCCTTCCCAAGCTTTCTAAACCATTCGTTGGCGCGCGGGCCCACGTAAG
TGTCCTAATCATAATAATAATCCATGATCATAATCCACAACCAGCCTAGG
GATCCTGTCATGACTATGTCTTGAATTCTCCCCAAATAAAAAACGCCCGG
CGGGCACCGAAGCCGTTCTGAACAAATCCAGATGGAGTTTTCGAAGTCTA
TTTACATGGATTCTTATCACAGGAGATC
UFO09261.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf1-RA | 1055 | CG9943-RA | 88..987 | 9..907 | 4400 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6959140..6959518 | 530..907 | 1720 | 98.7 | Plus |
| 3L | 28110227 | 3L | 6958433..6958636 | 9..212 | 1020 | 100 | Plus |
| 3L | 28110227 | 3L | 6958889..6959083 | 335..529 | 975 | 100 | Plus |
| 3L | 28110227 | 3L | 6958704..6958826 | 212..334 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:03:52 has no hits.
UFO09261.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:58 Download gff for
UFO09261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf1-RA | 85..991 | 2..911 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:29 Download gff for
UFO09261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf1-RA | 85..991 | 2..911 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:01 Download gff for
UFO09261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf1-RA | 85..991 | 2..911 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:01 Download gff for
UFO09261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6958705..6958826 | 213..334 | 100 | -> | Plus |
| 3L | 6958889..6959083 | 335..529 | 100 | -> | Plus |
| 3L | 6958430..6958636 | 2..212 | 98 | -> | Plus |
| 3L | 6959140..6959522 | 530..911 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:29 Download gff for
UFO09261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6951530..6951736 | 2..212 | 98 | -> | Plus |
| arm_3L | 6951805..6951926 | 213..334 | 100 | -> | Plus |
| arm_3L | 6951989..6952183 | 335..529 | 100 | -> | Plus |
| arm_3L | 6952240..6952622 | 530..911 | 98 | | Plus |
