UFO09262.5prime Sequence
1096 bp (993 high quality bases) assembled on 2011-08-17
> UFO09262.5prime
CAGTCGACATGGTCAATCCATCGCCCGCCCGAGGTGGAGAATCCACTGCC
CCCCACATCCTCCCCAATGAGATGGAGAATGACGTGGACAAGAGAATAGC
GACGCCACCTCCAGCACCAGCCGGTAGCGATGTCATCGCCGATGTTGTGG
GCGACTTTGGCATCTGGCAGCTGAGAACCATTCTCATCATCTTCCTGTGC
AAAATCCCTGCCGCCTGGTTCATGGCCTGCATCATCTTCACCGGACCGGA
ACTTTATCCCGGCTCGGAGTTCACCTGCGACACCAGTTATTTGACTAGCA
GCAGCAACTCCAGTTTTAGTATTTCGGATAACCAGTGCTATGTCCTGGAC
GAGTCCACTGGCACCAGCTCCGAGTGCGAGCAGTTCAACTACGTATCCAG
TTTCGACTCCCTGATCATGCAGTTCAATCTGGTCTGCTTGAGGGACATCT
TCGTGGCCTGGACTCAGTACTGGCATTTGTTCGGAGTTCTTGTAGGCGGC
GTTATGGGCACCAAGATGATGCTGGGCATCAGCCCGAGGAGCACCTATTG
TGTCGGTGCTGTAGCCCAGATTTTGTGTGGAGTAGTCACTGGATATGCTA
GGGATTTTAGTCTGCACTGCGCCTTCCGTTGTCTCTCCGCTGTCTGTTGT
GCGATCATGTTCACAGCTGGTCAAGCCATATTTGCCGATATCACGGCGGG
AATGCATCGCATTGGTGCCATTATCCTATACGACACTTTCTGGTCCATTG
GTGTGATTCTGTTGCCAGGACTCTCCTCGTTCTTCAACAGCTGGTCCCTG
ATATATGTGGGCATCACATTCCCCACTATCATGCTGATCTTGCTGCTCTA
CTGGACTCCGGATTCACCTCGCTGGCTGCTCCGGCACGCTGCGGATCGGT
TTCCATTGACAATGTGACAGAATCTTGCGTGAGGAGCGGCGATCATGATC
GCTCGTTCAGATCCCTCCGGATTCCGAACGCAGCTGGAGCACTAAGTGGC
GCTTGAGCCCACCCCCACACCTCTGGACGATTTGAGGAAAGCGGGCCAGA
CCAATGTACTGCCATGCTTGCTTTCGCTCCACTAGGGAGTCGCTCC
UFO09262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4462-RA | 2194 | CG4462-RA | 298..1319 | 8..1018 | 4780 | 98.5 | Plus |
| CG4465-RA | 1917 | CG4465-RA | 513..588 | 400..475 | 185 | 82.9 | Plus |
| CG4465-RA | 1917 | CG4465-RA | 264..371 | 154..261 | 180 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19923266..19923939 | 681..8 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 19922881..19923196 | 991..682 | 1205 | 96.5 | Minus |
| 3R | 32079331 | 3R | 19917252..19917327 | 475..400 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:04:01 has no hits.
UFO09262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:58 Download gff for
UFO09262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4462-RA | 1..1022 | 9..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:34 Download gff for
UFO09262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4462-RA | 291..1320 | 1..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:05 Download gff for
UFO09262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4462-RA | 291..1320 | 1..1021 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:05 Download gff for
UFO09262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19922848..19923196 | 682..1021 | 95 | <- | Minus |
| 3R | 19923266..19923942 | 1..681 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:34 Download gff for
UFO09262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15748570..15748918 | 682..1021 | 95 | <- | Minus |
| arm_3R | 15748988..15749664 | 1..681 | 99 | | Minus |
