UFO09266.5prime Sequence
1135 bp (1016 high quality bases) assembled on 2011-08-17
> UFO09266.5prime
CAGTCGACATGATTTCGGTAGCTCTGATTATCTTGTGCTTTTTTCCGTTC
GTGCAAAATGAGTACTTTCGTCCTTCGTACCAAGTCCTTGTGCGCAAAAG
GAATACTCAAGGAGATTTGATCGACGGCCATTGCTATGGCAATATCATTC
AGAGTCGCTTGGTTTTAACATCAGCATCGTGTTTATTGAGTGATAACGAT
TTCGTAAATGGTAGGGAATTGTTAAATGCTGATGAGTTGGCGGTATCATT
CAAAGGCGAAGATTTGAACGAGTTGATATACCTCGTTGGTGGCATAGACG
TATATCCGCAGTTCAATTTCTCATCGTTGGACAATGATATAGCGATCCTA
AGTCTCAGTACGCAACTTCCGCTTTCCGAGCGAAACGATATTGAATGGGT
TTTAGTCGCTGACTATGATATTACCGATTTTCCATTGGAGGAGGGTGTGG
AATCTTACGTTTGGAAAAATGCGGATGGAGAAAACATATATCCCGGTTAT
GGTGTTATTCATGAAAGTAATTTAGTTGGAATCATTTCCTATGGCTTGCC
ATTGAAAAATAAACGGGAATCTAATCTTGAAGTTCGGCGCCCAAATAGGT
TTACGCAATTAAATCCATATTTAAGTTGGATATATACAATAATACAGAAT
ACAGAGATTGCGGACATTCAAAATAACAACTACAGTGTATCTCTACCTTA
TCGTCAAAGAAAAATCGCAGAAATAGTGGAGGAATTCGTTGAGCCTGATG
CGGTGTATTTTCCAGACCCAGCAAACCCCATTAAAGATGAGATTGAAACT
GAGGTAGAAGATTTGACGGACTCAGAAACTGATGCTGTAACGTGGAAGCG
TCTCAGATGATTTTTAACACGGAGGACCCTTTTAATGAAACATTGAAAGT
GAGAAGGATTCCTAAAAACGAGCAAACACATCTAAGCCAAAGAGTTTGTG
CATGATATTCCACATTTAATTTCTTCTAGCGATACTCCGCCATAAATTTC
ATTTTTGCAGCTTTCTAGACCATCGTTGGGCGGCGGGCCAGGTAAGTGGT
CATATCCTATCATATCATATCTAATCCAACTAGCTAGGAATCTGGTCCTG
GACTAGTGCCTGGTATTCCAATAAAGCTGTGCACG
UFO09266.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34043-RB | 1227 | CG34043-RB | 43..1054 | 9..1006 | 4640 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10280379..10280830 | 460..9 | 2260 | 100 | Minus |
| 2L | 23513712 | 2L | 10280053..10280320 | 726..459 | 1340 | 100 | Minus |
| 2L | 23513712 | 2L | 10279629..10279688 | 784..725 | 285 | 98.3 | Minus |
| 2L | 23513712 | 2L | 10279520..10279570 | 831..781 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:04:36 has no hits.
UFO09266.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:01 Download gff for
UFO09266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34043-RB | 17..1028 | 9..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:51 Download gff for
UFO09266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34043-RB | 43..1054 | 9..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:18 Download gff for
UFO09266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34043-RB | 43..1054 | 9..1006 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:18 Download gff for
UFO09266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10280053..10280320 | 459..726 | 100 | <- | Minus |
| 2L | 10279520..10279570 | 781..831 | 100 | <- | Minus |
| 2L | 10279633..10279686 | 727..780 | 100 | <- | Minus |
| 2L | 10280381..10280830 | 9..458 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:51 Download gff for
UFO09266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10279520..10279570 | 781..831 | 100 | <- | Minus |
| arm_2L | 10279633..10279686 | 727..780 | 100 | <- | Minus |
| arm_2L | 10280053..10280320 | 459..726 | 100 | <- | Minus |
| arm_2L | 10280381..10280830 | 9..458 | 100 | | Minus |
