UFO09271.5prime Sequence
1133 bp (1018 high quality bases) assembled on 2011-08-17
> UFO09271.5prime
CAGTCGACATGGGTCTGGAATTGATCGTAATTGTGTCGCTAATCGCCTTG
GCCGGGGCCCAGCTTGTTCCGGAGAACTCGTGTCCGGACTACTTCCGCTA
TGTCAACGATGCCTTCCAGGGTGTGCAGGGCGAGATTACGCTGCCCAGCT
TGATGCGGGGTCGGAATCGCATAGATATACGTTTCTCGCAACGGGGTGAA
CAAGATGCCTCCGCCGTGGGTTCCCTGATCCCGTATCCGGATGAAAATGC
GGTACGACAGCTTACAGGATCGGCCAAATTTCGAATAGCCGTCAGACCAA
ATTCAAGCAACGGATTGCCCAAACTAACGCGTCTCTCCTACAACGAACAG
ATCTTGTGCTCGGCCAGCGAATACAGACCGCCCAATAGCTTCTTTAATCG
CTTCTATGAGCTCGACATCAGTGGTTCGCTGGCTTCGTTCCCTTCCTCCG
TATTCAATCCCTTCACCAGAGATGGCTTAGATGTGAATGTGCAGACAGTA
TTCTATCCTACCTCATCCCGTGGCAATGATATCTGGCGTGGTTTTACACA
GCCCTGGACGACTGTGTCCAACAGAAGCCCAGCAGTGGTAACTCCAGCAC
CCACTCCAACTGAGATTTTCTGGAATCAACCAGTACCCAGTGTTCCAATC
ACTTTTGCGCCACCTGTACCAACTATTACGAGCAGCCCAGCACCAGCACC
ACCACCACCACCACCACTTCCAACTCCACCAGCAGTTGTAACCGTTCCGC
CAGCTACTCCACCACCTCAACGCTTTGATCCGCGATCCAAATATCATCAG
TAGTTTGCGGTCGAGAGGGCAGCACAACTCCGTTTATTGTGCGTGGAAAC
GAATTCCCTCGAGGACAGTACCCCTGGCTATCGGCCGTCTATCACAAGGA
GGTTCGAGCTCTGGCCTTTAAGTGCAGAGGATCCCTGATCTCGTCCAGCA
TTGTAATTAGTGCCGCCCACTGGGGTGCATCGGATGACGGAGGACCGCGT
GGTCGTCGGACTCGGGCGCTAATGATTTTGGATGACTACCGGAAGGATGG
GCCGAATGCCCATGTTAATTGCGATTGCTTGGCATCGGATACAAATACCC
GGTCTGTATCGATGCGGAATTCGCTTGTATCCA
UFO09271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sp212-RC | 1681 | CG33329-RC | 77..1173 | 9..1104 | 5100 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14222884..14223532 | 1021..373 | 3135 | 99.5 | Minus |
| 3R | 32079331 | 3R | 14223881..14224079 | 207..9 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 14223643..14223808 | 372..207 | 830 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver2 | 4917 | diver2 DIVER2 4917bp | 2012..2058 | 651..606 | 115 | 74.5 | Minus |
UFO09271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:56 Download gff for
UFO09271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp212-RC | 73..1130 | 2..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:19 Download gff for
UFO09271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp212-RC | 73..1130 | 2..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:53 Download gff for
UFO09271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp212-RC | 73..1130 | 2..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:53 Download gff for
UFO09271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14223643..14223808 | 207..372 | 100 | <- | Minus |
| 3R | 14223882..14224083 | 2..206 | 98 | | Minus |
| 3R | 14222800..14223532 | 373..1107 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:19 Download gff for
UFO09271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10048522..10049254 | 373..1107 | 97 | <- | Minus |
| arm_3R | 10049365..10049530 | 207..372 | 100 | <- | Minus |
| arm_3R | 10049604..10049805 | 2..206 | 98 | | Minus |
