UFO09272.5prime Sequence
1112 bp (977 high quality bases) assembled on 2011-08-17
> UFO09272.5prime
CAGTCGACATGAGTTCGGCTCGCTTCGCGCGCTCAGGGCGCGTCCGTATC
TGCATCCTGATGAGCATGTTCATCGTGCTCATCATGATGATTGTTATCTA
CCAAATGTCCCAACACCAATTGGACGAGAGCCGCGCCTTCCAAGAGGGCC
TCAGTGTCCAGATGCAATCCCTGAATGCCGAAAAACTTACCGCCGAGAAG
AGAATGAGCGCGCTGCGCTCGGAAAAGATGACCCTGCAGGAGCAGTACGA
GGGTCAGTTGGCGGAGGCACTGCAGAAGCAGCACGACACGGAACACGCAC
TGCAGGAGAAGTTCGACGCTCAGGTGGAAAAGTACAAGCTGCTGGAGATT
AAGTACACCAACCTGGAGGCCGAGTTCGTCAAGAGCAAGAAGAAACACAT
CGAGGACACGAACGCTTTCGACCAAAAGCTGCAAAAGGTCCTGGCGGATC
TTCATAAGGACAAGGCCAGCAAGGAGCGCGAGGTGGCTGCCTGGAAGGAA
AAGCTGGACAAGCTACAGCGCGATGGTGAGCACAAGATTCACGCCCTGGA
AGCCACAATTGCGGAATTCAAGACCAACTGCAACTATGTACCTAAAGTCC
AGCCCGCCGAGGCACCGGTCCAGGGACACCAGCAGCAACTGAATAAGCCC
GCCGAGCAGATGCCCACCACGCACCACTCAAATCCTGCCCAGCTAGCGCA
CAGCATTGAAAAGCCCCGCAACGAGAAGTCCTTCGATGCCCAAGTGCAAA
TTGTGCCCAAATCGGTCAGTGAGAAGCAACAGCAGGAGGAGCCGCAACTA
TCCGGCGGTCCTGTTTCCCGTTAAGTGCACCCCGCAAGAGCAGCACCCAA
GCCTCAGGGGGCAGCGCTTCGGACAAGAAAGCCGGTGATGCCCCAACGCA
TCTTGTAGCCCAAAAGTTAGTAGCAGCGGCCTTCCCCCGCTTGCAGTGGC
ACAGCGAAGACTGGACGGCAAACTTTCCGGAAACGGTGGCTCCATTCCCG
GAGACTTTGAAGACCAGCGGATACTAGGGCGACGCTGTCGATGTAAACAC
GCGGCGAGACTGGGCGGAGAACGAAACACAATCGTACGCCACGCAGTAAG
GGATTGGAGGGC
UFO09272.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12213-RD | 2640 | CG12213-RD | 345..1460 | 9..1112 | 4875 | 96.9 | Plus |
| CG12213-RB | 1714 | CG12213-RB | 111..1226 | 9..1112 | 4875 | 96.9 | Plus |
| CG12213-RE | 2439 | CG12213-RE | 111..851 | 9..749 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11966796..11967125 | 498..169 | 1650 | 100 | Minus |
| 3R | 32079331 | 3R | 11966488..11966741 | 749..496 | 1270 | 100 | Minus |
| 3R | 32079331 | 3R | 11965983..11966286 | 1049..750 | 910 | 91.1 | Minus |
| 3R | 32079331 | 3R | 11967188..11967347 | 168..9 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:03:43 has no hits.
UFO09272.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:57 Download gff for
UFO09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12213-RB | 163..1226 | 3..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:24 Download gff for
UFO09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12213-RB | 106..1169 | 3..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:57 Download gff for
UFO09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12213-RB | 106..1169 | 3..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:57 Download gff for
UFO09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11966488..11966739 | 498..749 | 100 | <- | Minus |
| 3R | 11965981..11966286 | 750..1051 | 92 | <- | Minus |
| 3R | 11966797..11967125 | 169..497 | 100 | <- | Minus |
| 3R | 11967188..11967352 | 3..168 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:24 Download gff for
UFO09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7791703..7792008 | 750..1051 | 92 | <- | Minus |
| arm_3R | 7792210..7792461 | 498..749 | 100 | <- | Minus |
| arm_3R | 7792519..7792847 | 169..497 | 100 | <- | Minus |
| arm_3R | 7792910..7793074 | 3..168 | 98 | | Minus |
