UFO09274.5prime Sequence
1147 bp (1006 high quality bases) assembled on 2011-08-17
> UFO09274.5prime
CAGTCGACATGCCAAAGCCCTCTAAACAGGACTCTATCTCGTTAAAATCC
AGTAACTCAGTTTTTTTGGAAGATGACCAATTCGAAAATCTAGAGGAAGA
GTTTCTGCATAATGAATGCATTAGTTTACCCTCCGACTTAACGAGAGTAC
AAAGTGTTATTTTGGACTACAAGCAGTTCAAAGCGGCTCGCACAATTCAG
CGTTATATTCACGGATGGCTAGTTCGAGAAAATTTCCGAAAACTTCAGAA
GTCTGCGATTATTATTCAAAAATGGTGGCGCCGTTTTGAGGCTCAGAAAA
ATTTGCTTTATGTGGCCGAAAGCGCTTTGCAGTCGGCTGTTTTGGCCCAT
TACGACAAGTCTGCTACCCTGATTCAGACGCTCTATCGCGGATGGTGGTC
GCGAAAACATATCTTTGACCTAACCATGCTCAAGAGCGTGCAGATAATGT
TGGCAAAGGACCTGATTCACTCTTTGGTCAATTACTTGCACGCAACGAAA
AATTCTGAAATGCTTCCAGGCATTTACACGATACGGGACTCGAGCATATG
TCTGGAAACATTGGAGGAACTGATGGCAACATTTGGCTTTCGATTCTATA
ACGCTAATGCTTGCTACAAAATGAAGGAAACGTTGTCAATGGTGGCACAG
AGCCGAAAGACGTTTACGGCCACATCCTATTTCACGGATGTACCATATCC
CGGGTTTAATGATCGAGGATTTTGTGGCCCTCGGCAGAATTCTGCCATGA
CCTTGAATGCCAAAGATCCAGAACATTATGAATTGATTCACATATTCCTG
TCCGGTAGTAGAAAAATTGGCATGACAACGGCTAAGCTCGAACAGAAAAT
AGCCAACATTGCAGAAGAAAATCGCTTAATATGTTTATAAAGAGGGACAA
CAAGAAAAAGAGTTTTATTAAAAGGATTTATCTTGACATGAAGAACTGGC
ATTACTCAAATGGAGATCCATTCTTCCCATCAGCTTGTTTAAAAATAGTG
GGAATGCTGCGTCTGCAAGTGCCAAGAAAACTCTGGATCATTTGTGACCT
GGAGCGTGTGTTTGTCAACGACAAGAATTCTTCCTTTTAATTTCCTTATG
ATCTGCAGCTTTCTAGAACATTCGTTTGGCCGGCCAGTATGTCCTAG
UFO09274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18063-RE | 1276 | CG18063-RE | 84..1158 | 9..1071 | 5005 | 98.4 | Plus |
| CG18063-RC | 1283 | CG18063-RC | 84..1158 | 9..1071 | 5005 | 98.4 | Plus |
| CG18063-RD | 1280 | CG18063-RD | 84..1155 | 9..1071 | 4950 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15958184..15958584 | 144..544 | 2005 | 100 | Plus |
| 2L | 23513712 | 2L | 15958697..15959028 | 543..874 | 1660 | 100 | Plus |
| 2L | 23513712 | 2L | 15959102..15959225 | 878..1000 | 570 | 99.2 | Plus |
| 2L | 23513712 | 2L | 15958031..15958132 | 44..145 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:04:59 has no hits.
UFO09274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:45:02 Download gff for
UFO09274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18063-RE | 84..1173 | 9..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:00 Download gff for
UFO09274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18063-RC | 84..1173 | 9..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:28 Download gff for
UFO09274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18063-RC | 84..1173 | 9..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:28 Download gff for
UFO09274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15957941..15957975 | 9..43 | 100 | -> | Plus |
| 2L | 15958031..15958132 | 44..145 | 100 | -> | Plus |
| 2L | 15958186..15958584 | 146..544 | 100 | -> | Plus |
| 2L | 15958699..15959027 | 545..873 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:00 Download gff for
UFO09274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15957941..15957975 | 9..43 | 100 | -> | Plus |
| arm_2L | 15958031..15958132 | 44..145 | 100 | -> | Plus |
| arm_2L | 15958186..15958584 | 146..544 | 100 | -> | Plus |
| arm_2L | 15958699..15959027 | 545..873 | 100 | -> | Plus |
