UFO09279.5prime Sequence
1132 bp (999 high quality bases) assembled on 2011-08-17
> UFO09279.5prime
CAGTCGACATGAAGATCTTCGTAGCTGAAATAGTGCTACTAGCGAGCTTG
GTCCTTGGCGCAAGACTAGGATCCAGCACCCTGCTAACGAATGATTGCGG
GACAACGAGGCACCCATCGAGAATTCGGCGGGTTGTTGGAGGTAACGATG
CGGACAGGTTCGCCAACCCCTGGATGGTCATGGTGCTCGGAGAAAACAAT
GTCTTCTGCAGCGGTTCGCTAATCACTCGTCTTTTTGTCTTGACGTCAGC
GAGCTGCCTTTTATCGCTTCCCAAACAAGTGATCTTGGGCGAATACGACA
GGAACTGCACTTCTGCGGATTGCACGTCCATCCGCCAAGTGATTGATATC
GATCAGAAGATTATCCATGGCCAATTCGGCTTGGAAACCGTCAAAAAATA
TGATATTGCGCTACTTCGATTGGCAAAGAAGGTGTCGATCTCAGACTACG
TCAGACCAATTTGCCTGTCCGTCGATCGCCAAGTGGGACGTAGCGTTCAA
CATTTCACTGCCACCGGCTGGGGCACTACCGAATGGAATGAACCCAGCAC
CATTTTACAGACAGTCACACTAAGTAAAATCAATAGAAAGTATTGTAAAG
GCAGGCTAAGGCAGAATATCGATGCATCCCAGCTATGCGTTGGCGGTCCA
AGAAAGGACACTTGTAGTGGAGATGCTGGAGGCCCGCTGAGCTTAACGTT
GAGATCGATGGTGACGGCAAGTGGAATAATAAATCTCGGGCTTTTCTCAT
CGGCATTGTCAGCTATGGTAGTTCATCTTGTAGTGGTATCGGTGTTTACA
CAAATGTTGAGCACTATATGGATTGGATTGTAAGACCCATCAACAAAAGC
AATACAGAAAAAATTGCCAACGTCCATAGAAGTGCAAGCTTTCTAGATCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATATCATAATCATATCATA
ATCATAATCACACTAGCCTAGAAATCCTGGTCATGACTAGTTGCTTGGAT
CTCACAATAAAAAACGCCCGGCGCACTGAGCGTCCTGAACAATCGATGGA
GTTCTGAGGTCATTACTGATCTATCAAGGAGTCAGCGAGCTCGATATCAA
TACGCCCCGCCTGCCATCATCGCGAAGTACTG
UFO09279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33225-RB | 979 | CG33225-RB | 14..891 | 7..883 | 4350 | 99.8 | Plus |
| CG33225-RC | 1074 | CG33225-RC | 117..986 | 15..883 | 4310 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21591055..21591496 | 443..883 | 2145 | 99.5 | Plus |
| 2R | 25286936 | 2R | 21590445..21590669 | 7..231 | 1125 | 100 | Plus |
| 2R | 25286936 | 2R | 21590831..21591000 | 275..444 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 21590731..21590773 | 232..274 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:56:08 has no hits.
UFO09279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:27 Download gff for
UFO09279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33225-RB | 53..942 | 1..891 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:47 Download gff for
UFO09279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33225-RB | 7..896 | 1..891 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:00 Download gff for
UFO09279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33225-RB | 7..896 | 1..891 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:00 Download gff for
UFO09279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21590831..21591000 | 275..444 | 100 | -> | Plus |
| 2R | 21590438..21590669 | 1..231 | 98 | -> | Plus |
| 2R | 21590731..21590773 | 232..274 | 100 | -> | Plus |
| 2R | 21591057..21591501 | 445..891 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:47 Download gff for
UFO09279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17477943..17478174 | 1..231 | 98 | -> | Plus |
| arm_2R | 17478236..17478278 | 232..274 | 100 | -> | Plus |
| arm_2R | 17478336..17478505 | 275..444 | 100 | -> | Plus |
| arm_2R | 17478562..17479006 | 445..891 | 98 | == | Plus |
