UFO09285.5prime Sequence
1094 bp (1007 high quality bases) assembled on 2011-08-17
> UFO09285.5prime
CAGTCGACATGTCGTCGATTTCTACGATCATTGGATTGTGTCTTTTGTTC
TTTATGCTGAGCAATGTGGATGCTTATGGGCAAAAATGTAGTCCAGTCTT
TGGAAATTGCAACATGCATACAGATTGCTGCAGCGGAAAATGCTTAACCT
ACGGCTCACGTTGTGGCTATCCTGCGCACCGTCTTAAAGAAACATATTTG
AGTGCCAGTGAATTTCAGAGTATCAAAAAACAACGGGCACATTCAAACAA
TGATGAGGTGAAAGTTATTGGTCTACCTAGTGAGTCAGAACCATCGAATG
TTTTTTTTAAGATTGATTCGGCAGCAAAATGCCACAATGTTGGTGAACCC
TGCTCCCGGGGTGAAGAATGCTGTAATTTGAGATGTCACTCATATATGCA
CAGATGTGTCACCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCATAAACCCTTT
AGAAATAGGCCAGGTTTTCACCGTACACGCACATCTTGCGAATATATGTG
TAGAACTGCCGGAATCGTCGTGTATTCACTCAGAGCGATGAACGTTTCAG
TTTGCTCATGGAACGTGTACAGGGTGAACACTATCCCATATCACAGCTCA
CGGTCTTTCATGGCTACGGATCGATGAACCATCATCAAGCGCAG
UFO09285.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34034-RB | 637 | CG34034-RB | 12..416 | 9..413 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21738696..21738938 | 350..108 | 1215 | 100 | Minus |
| 3R | 32079331 | 3R | 21739001..21739099 | 107..9 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 21738566..21738628 | 413..351 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:56:48 has no hits.
UFO09285.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:30 Download gff for
UFO09285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34034-RB | 7..421 | 2..418 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:06 Download gff for
UFO09285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34034-RB | 7..421 | 2..418 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:18 Download gff for
UFO09285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34034-RB | 7..421 | 2..418 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:18 Download gff for
UFO09285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21738566..21738628 | 351..413 | 100 | <- | Minus |
| 3R | 21738696..21738938 | 108..350 | 100 | <- | Minus |
| 3R | 21739001..21739104 | 2..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:06 Download gff for
UFO09285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17564288..17564350 | 351..413 | 100 | <- | Minus |
| arm_3R | 17564418..17564660 | 108..350 | 100 | <- | Minus |
| arm_3R | 17564723..17564826 | 2..107 | 96 | | Minus |
