UFO09288.5prime Sequence
1130 bp (995 high quality bases) assembled on 2011-08-17
> UFO09288.5prime
CAGTCGACATGGCTTACCACCTCGAAGCGATTTCTTCGTTTCTGTATGTG
GGCCTTGGTTGCCTGATTGCCTCCTCTGTGGCACTAAGTACAGATACTGG
AAGTGAAGGCAACGCCGGTAACGTCGGTGGCTCAACCCTAAATAATGTCA
TCAGCGAAGATCCCGAGTTCACGGATGTGATCGAAAATATTACAGTGCCT
GCGGGGCGTAATGTAAAACTGGCTTGTTCAGTCAAGAACCTGGGATCCTA
TAAGGTCGCGTGGATGCACTTCGAGCAGTCGGCCATTCTCACAGTTCACA
ACCACGTGATAACGCGTAATCCAAGGATTAGTGTCACCCACGATAAGCAT
GACAAGCACCGCACCTGGTTCCTGCATATCAACAATGTCCAGGAGGAGGA
CAGGGGCCGATACATGTGCCAAATCAATACGGTTACGGCCAAGACCCAGT
ATGGATTTGTCAAAGTAGTGGTGCCGCCGAATATAGACGACGCTCTGACC
TCCAGTGACATCATCGTGCGCGAGGGCGATAACGTTACGCTACGCTGCAA
GGCGAAAGGTAGTCCGGAGCCGACCATCAAATGGAAACGCGATGACGGCA
ACAAAATCGTTATTAACAAGACGCTCGAGGTGCACGACTTGGAGACGGAT
TCTCTGGAGCTGGAGCGGATTTCGCGACTGCACATGGGCGCCTACCTGTG
CATCGCATCGAATGGTGTGCCGCCAAGTGTGTCCAAGCGGATCAAAGTCA
GCGTGGACTTTTCGCCCATGGTCTGGATACCGCATCAGCTGGTGGGTATT
CCCATTGGATTCAACATCACCCTGGAATGCTTCATCGAGGCGAATCCGAC
CTCACTTAACTATTGGACGCGCGAAACGATCAAATGATCACTGAGTCATC
AAAGTACAAAACCGAAACCATTCCCGGCATCCGTCGTACAAGGCGACCAT
GGCGGCTCACGATTACCAACGTTCAGAGCAGCGATTATGGCAACTACAGT
GGCGTCGCCAAAAATCCTCGGGGCGACATGGACGGCAACATAAAGCTGGT
ACATGTCGAGTCCGCGACAACACACGGCCGCCACAACACAAACGCTGGCG
GGCGGGACGAACAAACACCGGCGGGCGGGA
UFO09288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42368-RA | 3150 | CG42368-RA | 678..1769 | 9..1097 | 5160 | 98.7 | Plus |
CG31708-RC | 3384 | CG31708-RC | 904..1617 | 155..868 | 945 | 75.8 | Plus |
CG31708-RB | 3562 | CG31708-RB | 1022..1735 | 155..868 | 945 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6391128..6391346 | 471..253 | 1095 | 100 | Minus |
2L | 23513712 | 2L | 6386089..6386248 | 630..471 | 800 | 100 | Minus |
2L | 23513712 | 2L | 6385684..6385834 | 909..760 | 705 | 99.3 | Minus |
2L | 23513712 | 2L | 6408245..6408383 | 147..9 | 680 | 99.3 | Minus |
2L | 23513712 | 2L | 6385903..6386032 | 759..630 | 635 | 99.2 | Minus |
2L | 23513712 | 2L | 6380652..6380790 | 1048..910 | 555 | 96.4 | Minus |
2L | 23513712 | 2L | 6394835..6394944 | 256..147 | 550 | 100 | Minus |
2L | 23513712 | 2L | 9060727..9060928 | 454..253 | 530 | 84.2 | Minus |
2L | 23513712 | 2L | 9059471..9059561 | 759..669 | 260 | 85.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:57:15 has no hits.
UFO09288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:32 Download gff for
UFO09288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42368-RA | 651..1744 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:21 Download gff for
UFO09288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42368-RA | 671..1764 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:29 Download gff for
UFO09288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42368-RA | 671..1764 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:29 Download gff for
UFO09288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6380648..6380790 | 910..1053 | 96 | <- | Minus |
2L | 6385684..6385834 | 760..909 | 99 | <- | Minus |
2L | 6385903..6386031 | 631..759 | 99 | <- | Minus |
2L | 6386089..6386247 | 472..630 | 100 | <- | Minus |
2L | 6391128..6391344 | 255..471 | 100 | <- | Minus |
2L | 6394837..6394943 | 148..254 | 100 | <- | Minus |
2L | 6408245..6408390 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:21 Download gff for
UFO09288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6380648..6380790 | 910..1053 | 96 | <- | Minus |
arm_2L | 6385684..6385834 | 760..909 | 99 | <- | Minus |
arm_2L | 6385903..6386031 | 631..759 | 99 | <- | Minus |
arm_2L | 6386089..6386247 | 472..630 | 100 | <- | Minus |
arm_2L | 6391128..6391344 | 255..471 | 100 | <- | Minus |
arm_2L | 6394837..6394943 | 148..254 | 100 | <- | Minus |
arm_2L | 6408245..6408390 | 1..147 | 97 | | Minus |