UFO09289.5prime Sequence
844 bp (841 high quality bases) assembled on 2011-08-17
> UFO09289.5prime
CAGTCGACATGGCGTATATTCGAAATTTTCTGAATTCCCCCAATGACTGG
ACCCGACTTAATGAAAATATCAATGGAATAAAGCCACTGAATAGCTGCTT
TTATTTCTTCAGCTTGAAAACGGGCTGCAATTTGATCGCCGGATTCGAAG
CATTGGTAAATGTGCTACAAATGTGCAGCATTTACTTGTCGGAGATGGAG
GTCAAGACCACAATCACAACTACGGAGTCACCGGATTCGATGCTTGTCAC
TAGGGAACCGGACGGAGATATGCTGGGACCCAACATGAGAACGCCTATGT
TTGAAACTAACCTCTTCTTCCAAAAAGCACTAATCTCGTTGACTATCTTC
AGATCAGTGCTACTTATTGTAGGTGCAGAATGGAGTCACATATCCTGTCT
CGTCCTTTGGATTTGTATTACGGTTATAACCTTGTTAATTAGCACTTGTA
ATGATATCATGCAAGATGACGAGCTGCTGACTTTTCTCTTTTCTACCATT
TCTATTTTTCTTGAAATCTATTTCTGCGCAGTGGTTGCCTCCTTGGTTTT
GAAATTGCAGCAAAAACTTCGTCGTAACGTGCAGGAATCGGAAGTGCTGT
TCACACGAATGGAGGAAGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAATCATAATC
ACAACTAGCCCTAGGAGATCCTGGTCATGACTAGTGCTTGGGATTCTCAC
CATAAAAAAACGCCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GGAGTTCTTGAGGTCATTACTGGATCCTATCAACAGGAGTCCAG
UFO09289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34188-RA | 806 | CG34188-RA | 50..661 | 9..620 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15427600..15427974 | 383..9 | 1875 | 100 | Minus |
| 2R | 25286936 | 2R | 15427423..15427547 | 507..383 | 625 | 100 | Minus |
| 2R | 25286936 | 2R | 15427236..15427348 | 620..508 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:57:24 has no hits.
UFO09289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:32 Download gff for
UFO09289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34188-RA | 41..666 | 1..628 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:25 Download gff for
UFO09289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34188-RA | 41..666 | 1..628 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:34 Download gff for
UFO09289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34188-RA | 41..666 | 1..628 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:34 Download gff for
UFO09289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15427231..15427348 | 508..628 | 96 | <- | Minus |
| 2R | 15427423..15427546 | 384..507 | 100 | <- | Minus |
| 2R | 15427600..15427983 | 1..383 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:25 Download gff for
UFO09289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11314736..11314853 | 508..628 | 96 | <- | Minus |
| arm_2R | 11314928..11315051 | 384..507 | 100 | <- | Minus |
| arm_2R | 11315105..11315488 | 1..383 | 98 | | Minus |
