UFO09290.5prime Sequence
1114 bp (1017 high quality bases) assembled on 2011-08-17
> UFO09290.5prime
CAGTCGACATGGCAGTCCTGCGTGGTTGGAGATTCGTTGGATTCGTGTCC
TGCATCGTGGGCGCCGTGGGCCTCACCCTATACCCCGTCATTGTGGACCC
CATGGTTAACACTGAGAAATACAAAACCCTGCAGGAATACAGCAAAATCA
AGAGAGATGAACTGCAGCACATTAAAAGGCAGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACG
TTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAA
CATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAAC
ACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGGT
ATTCACTCCAGAGCGATGAAAACGTTTCAGTTTTGCTCATGGAAAACGGT
GTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTG
CCATACGAAATTCCGGATGAGCATTCATCAAGCGGGCAAGAATGTGAATA
AAGGCGGGAAAAACTTGTGCTTATTTTTTCTTTACGGTCTTTAAAAAGGC
CGTATATTCAGCTGACGGTCTGGTTATAGGTAACATTGAGCCACTGACTG
AAATGCCTCCAAATGTTCCTTACGATGCCATTGGGCATATACCACGTAGT
TATATCCATTGATTTTTTCTCCATTTAGCTCCTTAGCCTCTGAAGATCAT
AACTTCGTTAGCAC
UFO09290.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34242-RB | 343 | CG34242-RB | 14..187 | 9..182 | 870 | 100 | Plus |
| CG34242-RA | 366 | CG34242-RA | 30..203 | 9..182 | 870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12534067..12534240 | 9..182 | 870 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:57:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 750..818 | 126 | 66.7 | Plus |
UFO09290.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:44:33 Download gff for
UFO09290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34242-RA | 23..203 | 1..182 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:30 Download gff for
UFO09290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34242-RA | 23..203 | 1..182 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:38 Download gff for
UFO09290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34242-RA | 23..203 | 1..182 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:38 Download gff for
UFO09290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12534060..12534240 | 1..182 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:30 Download gff for
UFO09290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12527160..12527340 | 1..182 | 97 | == | Plus |
