UFO09306.5prime Sequence
1132 bp (1038 high quality bases) assembled on 2011-08-15
> UFO09306.5prime
CAGTCGACATGTTTATACCAGAAACTTTAAGAGGCTGTATGATCGAGACG
GACGTTTCTTCTTATTTGCAAACATCATCATCGGGACAGGATGAATTTCA
CCCTTTTATTGAGGCACTCTTACCGTACGTCAAATCATTTTCCTACTCTT
GGTTTAATTTGCAAGCCGCCAAACGAAAATATTATAAGAAACATGAAAAA
CGTATGTCACTGGAAGAAGAAAGACATTGTAAAGATGAACTCCAGAATGA
AAAGACTGAGGTGAAGCAAAAGTGGGCTTCCCGTCTTCTTGGAAAACTCA
GAAAAGACATTACACAAGAAAGTCGAGAGGATTTTGTGCAATCTATAATC
GGGAAAAGAAAATCAATTTGTGTTCTCTCAAACCCCGATCAAAAGGGAAA
AATGAGACGAATTGACTGCTTAAGACAGGCTGACAAAGTATGGCGGCTTG
ATTTGGTCATGGTTATACTCTTCAAGGCGATTCCATTAGAAAGCACAGAT
GGTGAGCGGTTAGAAAAAAATCCGGAATGTTTACATCCAGGATTATGTGT
AAATCCGTACCACATTAACGTGTCTGTTCGGGAATTGGACTTGTACTTGG
CCAACTTTATAAATACTCATAATTCAATTAACAATACAAATACGACTTTC
TCAACTACTCCGGGCGTAAGATCGCCACATATAACTATGTATAATCGAAG
TAATGATCCAAACAGAAAAGATGAGGTCGCTGACATGAAAAATGATGTCG
TTAAACAAAACCCATATAATGGTGTTGTTTGTAATGATATTATTTTAGCA
ACTGGCGTGTTTTCTTCTCAAGAACTGTGGACATTATCTAAAGATTTAAT
TTTAGATGAATCAAATGATATAAACCTAAACTCTAGCCTTATAAAGAGGG
AGACGTTGGAGCTACCTATGAGTGTAATACATATCAAATTAACTCTGAAT
CCTCAATTTCTGCTGCTCAGAAGTCTTGTTCATCTGGGTCATGCGGCTAA
TCCGATTCCACTTGGGATATAGCATGATTTTATAGATCAGAGGAATAAAC
CAATATCCTAGGTCATTGCCCACGTACAGAAAGGTCGAACCGGCGATTCC
CATGATGCCTAACAAATCGATCAGTAGCTAAC
UFO09306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NfI-RB | 4575 | CG2380-RB | 139..1256 | 9..1123 | 5165 | 98 | Plus |
| NfI-RC | 4702 | CG2380-RC | 139..1244 | 9..1123 | 5010 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 273115..273714 | 843..244 | 3000 | 100 | Minus |
| 4 | 1348131 | 4 | 273761..273918 | 245..88 | 790 | 100 | Minus |
| 4 | 1348131 | 4 | 272234..272410 | 1015..842 | 675 | 97.2 | Minus |
| 4 | 1348131 | 4 | 275579..275660 | 90..9 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:51:39 has no hits.
UFO09306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:53 Download gff for
UFO09306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NfI-RB | 133..1265 | 2..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:39 Download gff for
UFO09306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NfI-RB | 135..1267 | 2..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:15 Download gff for
UFO09306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NfI-RB | 135..1267 | 2..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:15 Download gff for
UFO09306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 272226..272408 | 844..1024 | 96 | <- | Minus |
| 4 | 273115..273712 | 246..843 | 100 | <- | Minus |
| 4 | 273761..273916 | 90..245 | 100 | <- | Minus |
| 4 | 275580..275664 | 2..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:39 Download gff for
UFO09306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 292852..293034 | 844..1024 | 96 | <- | Minus |
| arm_4 | 293741..294338 | 246..843 | 100 | <- | Minus |
| arm_4 | 294387..294542 | 90..245 | 100 | <- | Minus |
| arm_4 | 296206..296290 | 2..89 | 95 | | Minus |
