UFO09307.5prime Sequence
1106 bp (1012 high quality bases) assembled on 2011-08-15
> UFO09307.5prime
CAGTCGACATGCAGTATAGTCACACTCGCATCTCAGACTGGACTTGCATT
AAGTGTGGTGCCAGCAACTTTAAGCGCCGCTTCCAATGCTACATGTGCAA
TGCGTCGCGGGCGGAGAGCGAGAATGCTCTTTACGGAGCCGGCGAGGGCG
TCGACGAGATCAGCCAAATCCTCACAAAAAAGATCATGCTTCGCGGCTTG
GACGCGCTGACAAACGAGGAGGGCGTGCTAACTGCCCTTCAGCAGCGCCT
GCCCGAACTGGCCAAAACAGTCAGCAAGGTGCTGGTCAGTCGCGACGCCC
TAACCAATGCATCTCGGGGCATTTGCTACCTCAATTTTGACACACTCATT
GATTCTATGAACGTGTTCAACGGGCTGACGGCGTTGGATCCGCCACTCAC
TCTGGACGACAAAACAGTTATCGTCACCTACTGCATTGACTCCGAAAACC
GTCAAATGATGCCAGCCGAAGGCAACTTTTTTAGAGCAGGTGAAACAGCG
ATGTCTCCGTCGGCCATTACGGCGGCCTACACTTTGGCGGATGTGCCTCG
TCTTGCGGAGTACAGTGCATCCGTGTATGCCTCGAATCCGTTGGAGCATG
CTAACTACGTCCAGTACTATACGGATTATTACACGACTGAAATAAGCAAG
AACTGCAGAGATCGTCAAGTGACGGAGGCCAACTCCGGCGCTGCCGTTGC
TCTCTCGGCCATCCAGCGCAAGCAACGGAAGGTCAGCCAGATGGAGACCA
CGGTTTCGGTGACAGAGGCGAAAGTCGCCTTCCTTGCCAGGGGTGAAAGT
GCTCCCAAGGGGAATGATGGCAAGAAATACGATACTCCCGATGTGTCCAA
GTACCAGTACGACGAGACCTCCGGCTACTACTACGACCACGTTACAGGAC
TCTACTATGATGCCCACTCGCAGTACTACTACACAACGAGACGGGCGCGT
ATTTGTACTGGGATCAGAGCGGAGCACCTATGTGCTGCCACACCCGCTTC
ATCAGCAGCCCTCAGAGTATAGCGATGCGAGAAAAGGAGGAGGAGGCAAA
GCAAGGAAGAAAAGAAAGAAGAAGCTGGGGGAACCGACAGGTAGTGCCAA
GATCGC
UFO09307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:51:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4896-RI | 3118 | CG4896-RI | 961..2013 | 8..1047 | 4935 | 98.7 | Plus |
| CG4896-RG | 3781 | CG4896-RG | 1624..2676 | 8..1047 | 4935 | 98.7 | Plus |
| CG4896-RK | 3193 | CG4896-RK | 1036..2088 | 8..1047 | 4935 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1180510..1180926 | 415..831 | 2070 | 99.8 | Plus |
| 2L | 23513712 | 2L | 1180213..1180449 | 181..417 | 1185 | 100 | Plus |
| 2L | 23513712 | 2L | 1180994..1181166 | 831..1000 | 715 | 98.3 | Plus |
| 2L | 23513712 | 2L | 1179995..1180123 | 52..180 | 645 | 100 | Plus |
| 2L | 23513712 | 2L | 1176103..1176258 | 834..987 | 365 | 85.3 | Plus |
| 2L | 23513712 | 2L | 1175712..1175937 | 527..752 | 350 | 77 | Plus |
| 2L | 23513712 | 2L | 1179892..1179937 | 8..53 | 230 | 100 | Plus |
| 2L | 23513712 | 2L | 1175287..1175517 | 181..411 | 210 | 72.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:51:43 has no hits.
UFO09307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:54 Download gff for
UFO09307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4896-RE | 1586..2658 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:40 Download gff for
UFO09307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4896-RG | 1616..2688 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:17 Download gff for
UFO09307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4896-RK | 1028..2100 | 1..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:17 Download gff for
UFO09307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1180995..1181235 | 832..1061 | 92 | | Plus |
| 2L | 1179884..1179937 | 1..53 | 92 | -> | Plus |
| 2L | 1179997..1180123 | 54..180 | 100 | -> | Plus |
| 2L | 1180213..1180449 | 181..417 | 100 | -> | Plus |
| 2L | 1180513..1180926 | 418..831 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:40 Download gff for
UFO09307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1179884..1179937 | 1..53 | 92 | -> | Plus |
| arm_2L | 1179997..1180123 | 54..180 | 100 | -> | Plus |
| arm_2L | 1180213..1180449 | 181..417 | 100 | -> | Plus |
| arm_2L | 1180513..1180926 | 418..831 | 99 | -> | Plus |
| arm_2L | 1180995..1181235 | 832..1061 | 92 | | Plus |
